TABLE 1.

T. cruzi DNA samples used in this study and defined alleles

Isolatea	DTUb	SL RNAc	D7 rRNAd	Ribocladee	DHFR	TRf	COII-ND1f	PGPg	GPIh	TCPh
Cutia	I	I	2	A
Silvio X10 cl.1	I	I	2	2	A	A	A	A	I	I
CANIII	IIa	IIa	3	4ij	D	D	B	IIa	IIa
MT4167	IIa	IIa	3	4
CM17	IIc	“III”	2	3k	B	B	B
M5631 cl.5	IIc	IIc	2	3k
M6241 cl.6	IIc	IIc	2	3k	B	B	B	B	IIc	IIc
X9/3	IIc	2	B
CBB cl.3	IIb	IIb	1	C	C	C
Esmeraldo cl.3	IIb	IIb	1	C	C	C	C	IIb	IIb
MAS1 cl.1	IIb	C	IIb
MSC2	IIb	1	C	C	C
TU18 cl.2	IIb	IIb	1	C
Y	IIb	IIb	1	1
GM-0	IId
MN cl.2	IId	IIb	1/2
NR	IId	II	1/2	3j
P255	IId
SAXP19	IId
SC43 cl.1	IId	IIb	1	3	IIb, c	I, IIb, c
SO3	IId	II	1/2	3	B, C	B, C	B	C	IIb
86/2036	IIe	B
CL Brener	IIe	IIb	1	1	B, C	B, C	B	C	IIb, c	IIb
P63 cl.1	IIe	II	B
Sabcho109a	IIe	1
Tula cl.2	IIe	II	1		B, C	B, C	B	C

^aOrigin of isolates are described in Brenière et al. (1998); Brisse et al. (2001); Barnabé et al. (2001b).

^bAccording to Brisse et al. (2000).

^cDetermined in Souto et al. (1996); Campbell et al. (2004). For consistency with proposed terminology (Anonymous 1999), I and II designations have been reversed from the original publications, e.g., Souto et al. (1996).

^d1, 125 bp Souto and Zingales (1993); 2, 110 bp Souto and Zingales (1993); 3, 117–120 bp Brisse et al. (2001); Mendonça et al. (2002).

^eDetermined in Kawashita et al. (2001).

^fDetermined in Machado and Ayala (2001).

^gDetermined in Robello et al. (2000)

^hDetermined in Gaunt et al. (2003).

ⁱDetermined in Brisse et al. (2001).

^j18S rRNA Kawashita et al. (2001).

^kCampbell et al. (2004).