TABLE 5.
Positions of SNPs for loci where DTUs IIa/IIc are split between DTUs I and IIb
| Strain | SNP |
|---|---|
| Histone H1 | |
| 1111111122233344 | |
| 33566890114457948915745 | |
| 78118783685630407000558 | |
| Dm28c (I) | CGGGTCTTCTCCCGTCCCCTTAC |
| Silvio X10 (I) | CGGGTCTTCTCCTGTCCCCTTAC |
| CANIII (IIa),a M4167 (IIa)a | CTGGCTCCTTTTTTGCGTCTCGT |
| CANIII (IIa)b | CTGGTTCCCTTTTTGCGTCTCGT |
| M4167 (IIa)b | CTGGTCTCCTTTTTTCGTCTCGT |
| M5631 (IIc) | CTGGTCTCCTTCTGTCCTCTCAT |
| CM17 (IIc), CL Brener, Tula (IIe) | CTCGTCTCCTTCCGTCCTTTCAT |
| P63 (IIe) | CTCGTCTCCTTCCGTCCTCTCAT |
| SC43 (IId) CL Brenerc (IIe) | TTGATCCCTGTTTGTCCCCCTAT |
| CBB (IIb), Esmeraldo (IIb) | TTGATCCCTGTTTGTTCCCCCAT |
| Histone H3 | |
| 1111111122223333444555555 | |
| 2551445679912570367035001235 | |
| 4054080626767668952556349116 | |
| Dm28c (I), Silvio X10 (I) | ACTTCAGCGCGTTTATCATTGTTTCTTT |
| CANIII, M4167 (IIa) | TCCCCGTTACGTTTACCATCATCCTCTT |
| CM17, M5631 (IIc) | TCTTCGTCGTGAGTGTTATTATTTTTTT |
| CL Brener, P63 (IIe) | TCTTCGTCGTGAGTGTTATTATTTTTTT |
| Esmeraldo (IIb), NR (IIe) | TCTTTGTCCTTTTCATCGCTAGCATTGC |
| CBB (IIb), SC43 (IId) | TATTTGTCCTTTTCATCGCTAGCATTGC |
| MN (IId), CL Brenerd (IIe) | TCTTTGTCCTTTTCATCGCTAGCCTTGC |
SNP positions are relative to CL Brener.
a
Uncut alleles from DTU IIa strains.
b
Cut alleles from DTU IIa strains.
c
CL Brener IIb-like obtained from TIGR sequence TcTSK-TGC107157.
d
CL Brener IIb-like obtained from TIGR sequence TcTIGR-TCGOI28TF.