TABLE 6.
Positions of SNPs for loci where DTUs IIa/IIc are more similar to DTU IIb
| Strain | SNP |
|---|---|
| HSP60 | |
| 1111122222222333333a | |
| 23591234813346799478999 | |
| 38146522463535457932125 | |
| Dm28c, SilvioX10 (I) | GCGTAAATCGCCATAACTAGCGC |
| CANIII (IIa) | GTGTAACCTGTCATAGTGGGAAA |
| M4167 (IIa) | GTGTAACCTGTCGTAGTGGGAAA |
| CM17 (IIc), M5631 (IIc) | ACATGGCTCATCGCGGTGGGCAC |
| NRb (IIe) | ACACGGCTCATCGCGGTGGGAAC |
| CL Brener,b P63b (IIe), SO3b (IId) | ACACGGCTCATCGCGGTGGGCAC |
| CBB, CL14c (IIb), Esmeraldo (IIb), SO3d (IId), P63d (IIe), CL Brenere (IIe) | GCGCAACTCCTTATAGTGGTCAC |
| 1F8 | |
| 1111111222222e | |
| 5890555599223369 | |
| 5735024801374671 | |
| Dm28c, Silvio X10 (I) | CGCGCGGTGGGCTTTT |
| CANIII, M4167 (IIa) | CGCGCGGGGGGCGCGC |
| M5631 (IIc) | CGCGCGGGGTGCGCGC |
| CM17 (IIc), MN,b SC43b (IId) | CGCGCGGGTTGCGCGC |
| SO3b (IId), CL Brener,b P63b, Sabcho109ab (IIe) | CGCGCGGGTTTTGCGC |
| CL Brener,f P63d (IIe) | TATTTTTGGGGCGCGT |
| Y(IIb), NRd (IIe), MNc,b SC43d (IId) | TATGCTTGGGGCGCGT |
| Sabcho109a,d SO3d (IIe) | TATTCTTGGGGCGCGT |
| Esmeraldo (IIb) | TATGCTGCGGGCGCGT |
CL14 is from GenBank X67473.
a
SNP positions relative to Dm28c (I).
b
DTU IIb-like allele in hybrid isolates.
c
CL Brener obtained from TIGR sequence TcTIGR_TCKCA96TR.
d
DTU IIc-like allele in hybrid isolates.
e
SNP positions relative to CL Brener (IIe) from GenBank BH843665.
f
CL Brener IIb-like obtained from TIGR sequence TcTIGR_TCGO128TF.