TABLE 1.
Conditional merge analysis of variants that could explain all of the genetic variability in the data set
| Classification | Position | Merge log P | Max. conditional log P | A/J | AKR | BALB/cJ | C3H | C57BL/6 | DBA/2 | I | RIII | SDP |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC | 2335805 | 9.10 | 1.56 | CTTT [13] | CTTT [7] | CTTT [7] | CTTT [13] | CTTT [7] | CTTT [7] | CTTT [11] | CTTT [11] | 01101122 |
| Intron rgs18 | 2409307 | 9.10 | 1.71 | CA [22] | CA [23] | CA [23] | CA [22] | CA [23] | CA [23] | CA [25] | CA [25] | 01101122 |
| Intron rgs18 | 2412379 | 9.10 | 1.76 | A [12] | A [15] | A [15] | A [12] | A [15] | A [15] | A [11] | A [11] | 01101122 |
| Intron rgs18 | 2418850 | 9.10 | 1.79 | CA [22] | CA [23] | CA [23] | A [22] | CA [23] | CA [23] | CA [24] | CA [24] | 01101122 |
| Intron rgs18 | 2421868 | 9.10 | 1.92 | A [13] | A [11] | A [11] | A [13] | A [11] | A [11] | A [14] | A [14] | 01101122 |
| NC | 3680729 | 10.05 | 1.92 | CA [22] | CA [14] | CA [21] | CA [22] | CA [21] | CA [14] | CA [14] | CA [14] | 01202111 |
| NC | 3751958 | 9.87 | 1.92 | A [9] | A [11] | A [10] | A [9] | A [10] | A [11] | A [9] | A [11] | 01202101 |
| NC | 3790500 | 10.04 | 1.92 | CA [16] | CA [24] | CA [17] | CA [16] | CA [17] | CA [24] | CA [16] | CA [24] | 01202101 |
| NC | 3906262 | 9.95 | 1.92 | GT [24] | GT [17] | GT [23] | GT [24] | GT [23] | GT [17] | GT [23] | GT [17] | 01202121 |
| NC | 3949974 | 9.31 | 1.92 | CT [22] | CT [16] | CT [18] | CT [22] | CT [18] | CT [16] | CT [19] | CT [16] | 01202131 |
| NC | 3981213 | 10.04 | 1.95 | CA [21] | CA [22] | CA [20] | CA [21] | CA [20] | CA [22] | CA [21] | CA [22] | 01202100 |
| NC | 3997269 | 10.14 | 1.96 | CT [28] | CT [23] | CT [25] | CT [28] | CT [26] | CT [23] | CT [26] | CT [23] | 01203131 |
| NC | 4053050 | 9.75 | 1.97 | T | C | C | T | C | C | C | C | 01101111 |
| NC | 4107860 | 9.77 | 1.99 | A | G | G | A | G | G | G | G | 01101111 |
Shown are all variants for which the maximum conditional log P of any other variant is <2 (i.e., P-value 0.01). Classification, the context of the variant; NC, not conserved noncoding sequence; Position, location in base pairs of variant from start of 48-Mb region; Merge log P, the log P of the variant; Max conditional log P, the maximum log P across all other variants, conditional upon the first variant being fitted; A/J through RIII columns, the variant's alleles in the eight HS progenitors; SDP, the strain distribution pattern of the variant.