TABLE 3.

The estimated posterior probability of for the six marker orders with the largest exact log likelihoods (log L) for replicates 1 and 2 from 1-F

Replicate 1			Replicate 2
Marker order	log L	Posterior prob	Marker order	log L	Posterior prob
1 2 3 4 5 6 7 8	−1903.19	0.967	1 2 3 4 5 6 7 8	−1888.35	0.284
2 1 3 4 5 6 7 8	−1905.52	0.018	1 2 3 4 5 7 6 8	−1888.35	0.264
3 1 2 4 5 6 7 8	−1906.67	0.015	1 3 2 4 5 7 6 8	−1888.47	0.217
1 2 3 5 4 6 7 8	−1907.42	NS	1 3 2 4 5 7 6 8	−1888.47	0.235
1 2 3 4 5 6 8 7	−1908.17	NS	1 2 3 4 6 5 7 8	−1892.91	NS
3 2 1 4 5 6 7 8	−1909.60	0.001	1 3 2 4 6 5 7 8	−1893.10	NS

NS, a marker order not sampled by the MCMC procedure.