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. 1996 May 15;24(10):1943–1949. doi: 10.1093/nar/24.10.1943

Programmed DNA rearrangement from an intron during nuclear development in Tetrahymena thermophila: molecular analysis and identification of potential cis-acting sequences.

J Li 1, R E Pearlman 1
PMCID: PMC145875  PMID: 8657578

Abstract

During macronuclear development in the ciliate Tetrahymena thermophila, extensive rearrangement events occur as DNA deletions. We have studied a developmentally programmed deletion called mse2.9 that occurs within an intron in a gene in both genomic DNA and in an rDNA vector introduced into the cell by transformation. Extensive microheterogeneity at the deletion junctions has been found in caryonidal strains and in the rDNA in transformed cells. A transformation assay has been used to identify sequences required for proper processing of mse2.9. Models to explain deletion site selection as well as microheterogeneity at junction sites are presented.

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Selected References

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  1. Austerberry C. F., Allis C. D., Yao M. C. Specific DNA rearrangements in synchronously developing nuclei of Tetrahymena. Proc Natl Acad Sci U S A. 1984 Dec;81(23):7383–7387. doi: 10.1073/pnas.81.23.7383. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Austerberry C. F., Snyder R. O., Yao M. C. Sequence microheterogeneity is generated at junctions of programmed DNA deletions in Tetrahymena thermophila. Nucleic Acids Res. 1989 Sep 25;17(18):7263–7272. doi: 10.1093/nar/17.18.7263. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Don R. H., Cox P. T., Wainwright B. J., Baker K., Mattick J. S. 'Touchdown' PCR to circumvent spurious priming during gene amplification. Nucleic Acids Res. 1991 Jul 25;19(14):4008–4008. doi: 10.1093/nar/19.14.4008. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Engberg J., Nasir-ud-Din, Eckert W. A., Kaffenberger W., Pearlman R. E. Detailed transcription map of the extrachromosomal ribosomal RNA genes in Tetrahymena thermophila. J Mol Biol. 1980 Sep 25;142(3):289–313. doi: 10.1016/0022-2836(80)90274-0. [DOI] [PubMed] [Google Scholar]
  5. Gaertig J., Gorovsky M. A. Efficient mass transformation of Tetrahymena thermophila by electroporation of conjugants. Proc Natl Acad Sci U S A. 1992 Oct 1;89(19):9196–9200. doi: 10.1073/pnas.89.19.9196. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Gaertig J., Thatcher T. H., Gu L., Gorovsky M. A. Electroporation-mediated replacement of a positively and negatively selectable beta-tubulin gene in Tetrahymena thermophila. Proc Natl Acad Sci U S A. 1994 May 10;91(10):4549–4553. doi: 10.1073/pnas.91.10.4549. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Godiska R., James C., Yao M. C. A distant 10-bp sequence specifies the boundaries of a programmed DNA deletion in Tetrahymena. Genes Dev. 1993 Dec;7(12A):2357–2365. doi: 10.1101/gad.7.12a.2357. [DOI] [PubMed] [Google Scholar]
  8. Godiska R., Yao M. C. A programmed site-specific DNA rearrangement in Tetrahymena thermophila requires flanking polypurine tracts. Cell. 1990 Jun 29;61(7):1237–1246. doi: 10.1016/0092-8674(90)90688-b. [DOI] [PubMed] [Google Scholar]
  9. Golding G. B., Tsao N., Pearlman R. E. Evidence for intron capture: an unusual path for the evolution of proteins. Proc Natl Acad Sci U S A. 1994 Aug 2;91(16):7506–7509. doi: 10.1073/pnas.91.16.7506. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Heinonen T. Y., Pearlman R. E. A germ line-specific sequence element in an intron in Tetrahymena thermophila. J Biol Chem. 1994 Jul 1;269(26):17428–17433. [PubMed] [Google Scholar]
  11. Kahn R. W., Andersen B. H., Brunk C. F. Transformation of Tetrahymena thermophila by microinjection of a foreign gene. Proc Natl Acad Sci U S A. 1993 Oct 15;90(20):9295–9299. doi: 10.1073/pnas.90.20.9295. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Katoh M., Hirono M., Takemasa T., Kimura M., Watanabe Y. A micronucleus-specific sequence exists in the 5'-upstream region of calmodulin gene in Tetrahymena thermophila. Nucleic Acids Res. 1993 May 25;21(10):2409–2414. doi: 10.1093/nar/21.10.2409. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Larson D. D., Blackburn E. H., Yaeger P. C., Orias E. Control of rDNA replication in Tetrahymena involves a cis-acting upstream repeat of a promoter element. Cell. 1986 Oct 24;47(2):229–240. doi: 10.1016/0092-8674(86)90445-9. [DOI] [PubMed] [Google Scholar]
  14. Prescott D. M. The DNA of ciliated protozoa. Microbiol Rev. 1994 Jun;58(2):233–267. doi: 10.1128/mr.58.2.233-267.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Saveliev S. V., Cox M. M. The fate of deleted DNA produced during programmed genomic deletion events in Tetrahymena thermophila. Nucleic Acids Res. 1994 Dec 25;22(25):5695–5701. doi: 10.1093/nar/22.25.5695. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Saveliev S. V., Cox M. M. Transient DNA breaks associated with programmed genomic deletion events in conjugating cells of Tetrahymena thermophila. Genes Dev. 1995 Jan 15;9(2):248–255. doi: 10.1101/gad.9.2.248. [DOI] [PubMed] [Google Scholar]
  17. Tondravi M. M., Yao M. C. Transformation of Tetrahymena thermophila by microinjection of ribosomal RNA genes. Proc Natl Acad Sci U S A. 1986 Jun;83(12):4369–4373. doi: 10.1073/pnas.83.12.4369. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Wells J. M., Ellingson J. L., Catt D. M., Berger P. J., Karrer K. M. A small family of elements with long inverted repeats is located near sites of developmentally regulated DNA rearrangement in Tetrahymena thermophila. Mol Cell Biol. 1994 Sep;14(9):5939–5949. doi: 10.1128/mcb.14.9.5939. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Yao M. C., Choi J., Yokoyama S., Austerberry C. F., Yao C. H. DNA elimination in Tetrahymena: a developmental process involving extensive breakage and rejoining of DNA at defined sites. Cell. 1984 Feb;36(2):433–440. doi: 10.1016/0092-8674(84)90236-8. [DOI] [PubMed] [Google Scholar]
  20. Yao M. C., Yao C. H. Accurate processing and amplification of cloned germ line copies of ribosomal DNA injected into developing nuclei of Tetrahymena thermophila. Mol Cell Biol. 1989 Mar;9(3):1092–1099. doi: 10.1128/mcb.9.3.1092. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Yao M. C., Yao C. H. Detection of circular excised DNA deletion elements in Tetrahymena thermophila during development. Nucleic Acids Res. 1994 Dec 25;22(25):5702–5708. doi: 10.1093/nar/22.25.5702. [DOI] [PMC free article] [PubMed] [Google Scholar]

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