. 2006 May;141(1):147–166. doi: 10.1104/pp.105.076208

Table I.

Summary of apple ESTs

Library Code	Library Description	Minimum Sequence Length	Average Sequence Length	Maximum Sequence Length	Total No. ESTs	No. ESTs Assigned to TC^a	No. Singletons	Percentage of Singletons per Library
AAAA	Royal Gala 59 DAFB^b fruit, seeds removed	50	425	767	7,018	5,495	1,523	21.7
AAFA	Royal Gala apple skin peel, tree-ripened fruit 150 DAFB	47	382	821	6,184	5,389	795	12.9
AAFB	Royal Gala apple skin peel, tree-ripened fruit 150 DAFB	50	331	682	1,556	1,058	498	32.0
AAGA	Pinkie expanding leaf, normalized	51	342	702	530	418	112	21.1
AAKA	Pinkie expanding leaf, normalized	51	365	687	516	389	127	24.6
AALA	Royal Gala 150 DAFB fruit cortex	50	348	721	5,282	4,130	1,152	21.8
AALB	Royal Gala 150 DAFB fruit cortex	51	341	739	1,275	933	342	26.8
AAMA	Royal Gala spur bud autumn	51	374	668	988	679	309	31.3
AANA	Royal Gala partially senescing leaf	50	318	729	1,888	1,453	435	23.0
AAOA	Royal Gala phloem	50	371	734	4,519	3,059	1,460	32.3
AAPA	Royal Gala 24 DAFB fruit	50	482	771	2,649	2,003	646	24.4
AARA	Royal Gala partially senescing leaf	50	451	770	8,838	6,412	2,426	27.4
AASA	Royal Gala 10 DAFB fruit	51	553	767	4,860	4,169	691	14.2
AASB	Royal Gala 10 DAFB fruit	187	562	777	4,240	3,945	295	7.0
AASC	Royal Gala 10 DAFB fruit	200	440	697	405	378	27	6.7
AAUA	Royal Gala 87 DAFB fruit cortex	182	511	748	2,458	2,361	97	3.9
AAWA	Royal Gala 59 DAFB seeds	101	520	766	5,472	4,769	703	12.8
AAXA	Royal Gala 126 DAFB fruit core	195	514	766	5,092	4,655	437	8.6
AAYA	Royal Gala 126 DAFB fruit cortex	118	521	742	4,481	3,946	535	11.9
AAZA	M9 xylem	97	506	756	5,004	3,914	1,090	21.8
ABAA	Pacific Rose spur buds	139	512	736	789	600	189	24.0
ABAB	Pacific Rose spur buds	105	589	751	486	378	108	22.2
ABBA	Pacific Rose spur buds	201	524	740	1,078	886	192	17.8
ABBB	Pacific Rose spur buds	226	591	753	495	403	92	18.6
ABCA	Royal Gala fruit stored at 0.5°C for 24 h	186	523	756	4,693	4,215	478	10.2
ABDA	Royal Gala fruit stored for 24 h under low oxygen/high CO₂	165	552	741	4,808	4,616	192	4.0
ABEA	Royal Gala seedling leaves infected with V. inaequalis^c	170	564	775	4,798	3,967	831	17.3
ABEB	Royal Gala seedling leaves infected with V. inaequalis^c	198	521	766	562	395	167	29.7
ABKA	Royal Gala temperature stress leaves	128	539	770	1,075	927	148	13.8
ABLC	Braeburn cell culture 3 d after subculture	72	573	764	4,715	4,082	633	13.4
ABMA	M9 phloem	108	557	781	4,900	4,383	517	10.6
ABNB	Braeburn cultured fruit cells, boron exposed	209	585	754	944	777	167	17.7
ABPB	M9 root tips	86	562	760	4,813	3,963	850	17.7
ABQA	Royal Gala flower	199	504	749	926	831	95	10.3
AEAA	Aotea expanding leaf	51	349	758	1,665	1,524	141	8.5
AELA	Royal Gala young expanding leaf	50	318	712	5,457	4,388	1,069	19.6
AENA	Northern Spy expanding leaf	52	428	759	1,222	918	304	24.9
AEPA	Pinkie expanding leaf	50	370	828	4,786	3,891	895	18.7
AFBC	Royal Gala preopened floral bud	50	350	877	4,959	3,933	1,026	20.7
AOFA	Royal Gala 24 DAFB fruit	51	344	777	1,077	782	295	27.4
AVBB	Royal Gala young shoot	50	296	737	5,572	4,511	1,061	19.0
AVBC	Royal Gala young shoot	57	544	790	17,967	15,874	2,093	11.6
AYFB	Royal Gala 10 DAFB fruit	54	304	693	645	410	235	36.4
Total for all libraries combined		47	468	877	151,687	17,460^d	25,478
				Total no. of NR sequences 43,938

Number of ESTs from each library that have been assigned to a TC sequence (contig).

Days after full bloom.

These libraries also will contain fungal sequences derived from the pathogen V. inaequalis (K. Plummer, W. Cui, and M. Templeton, unpublished data).

Total number of unique TC sequences in the entire database (i.e. this figure is not additive).