TABLE 1.
Model variables and parameters
Symbol | Meaning | Value used in shown figures | Values tested in model | Reference |
---|---|---|---|---|
Model variables | ||||
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Position of the right and left kinetochore | Variable | ||
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Position of the plus end of the ith right and left kMT | Variable | ||
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Velocity of the right and left kinetochore | Variable | ||
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Velocity of the ith right kMT | Variable | ||
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Velocity of the ith left kMT | Variable | ||
Model parameters | ||||
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Maximal motor force for dynein, cenpE, and depolymerization motors, respectively. | 1.2 pN | ||
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2 pN | 0.1–10 pN | (40,69) | |
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5 pN | |||
nd | Number of dynein, cenpE motors per micron, and depolymerization motors per MT minus end, respectively. | 15 | ||
nc | 5 | 1–50 | Assumed in this article. | |
ndep | 20 | |||
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Unloaded rate for dynein, cepnE, and depolymerization motors, respectively. | 0.5 μm/s | ||
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0.12 μm/s | 0.01–1 μm/s | (40,70) | |
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0.05 μm/s | |||
μ | Effective viscous drag coefficient of Drosophila chromosome | 5 pN·s/μm | 1–10 | (42) |
N | Maximum number of MT binding sites at the kt. | 7–30 | 1–50 | (2,6) |
ɛ | Elastic modulus of the kt plate. | 25–100 pN/μm | 10–200 pN/μm | Assumed in this article. |
κ | The spring constant and the rest length of cohesin bonds between sister kts. | 50–100 pN/μm | 10–200 pN/μm | (34) |
d0 | 0.5 μm | 0.5–2 μm | ||
r | Distance between the corona tip and the kt plate. | 0.5 μm | 0.1–1 μm | (25) |
ρ | Coefficient of polar ejection force intensity. | 4 pN/μm2 | 1–10 pN/μm2 | (34,36) |
vg and vs | Growth and shrinkage rate of MTs. | 0.25 μm/s | 0.05–0.3 μm/s | (71) |
fres | Rescue and catastrophe frequencies of MTs. | 0.05–0.1/s | 0.2–0.005/s | (58,71) |
fcat | 0.08–0.01/s | |||
φ | Scaling factor for growth and shrinkage rate of MT tips in the kt. | 2 | 1–5 | Assumed in this article. |
γKLP59C | Scaling factor for decrease in rescue frequency by KLP59C. | 10 | 1–50 | (44) |
ϕ | Scaling factor for increase in catastrophe frequency for MT tip impinging on kt plate. | 2 | 1–5 | (45) |
α | Factor for rescue frequency dependence on tension between kts. | 0.45/pN | 0.1–2 | Assumed in this article. |
β | Factor for rescue frequency dependence on polar ejection forces. | 0.3/pN | 0.1–2 | Assumed in this article. |
ζ | Factor for rescue frequency dependence on polymerization ratchet forces. | 0.2–0.1/pN | 0.01–1 | Assumed in this article. |