Table 2.
Gene | Region | Total* | Number of
polymorphic sites at frequency of
|
|||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | |||
“adh3” whole sample | ||||||||||||||
(n = 25 accessions) | ||||||||||||||
All | 104 | 23 | 6 | 3 | 0 | 1 | 0 | 2 | 0 | 3 | 0 | 1 | 65 | |
Intron | 56 | 7 | 4 | 2 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 41 | |
Exon | 48 | 16 | 2 | 1 | 0 | 0 | 0 | 1 | 0 | 3 | 0 | 1 | 24 | |
Replacement | 22 | 9 | 2 | 1 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 1 | 7 | |
Synonymous | 26 | 7 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 17 | |
“adh3” cluster 1 | ||||||||||||||
(n = 13 accessions) | ||||||||||||||
All | 28 | 22 | 4 | 0 | 0 | 1 | 1 | |||||||
Intron | 11 | 7 | 2 | 0 | 0 | 1 | 1 | |||||||
Exon | 17 | 15 | 2 | |||||||||||
Replacement | 11 | 9 | 2 | |||||||||||
Synonymous | 6 | 6 | ||||||||||||
“adh3” cluster 2 | ||||||||||||||
(n = 12 accessions) | ||||||||||||||
All | 13 | 3 | 3 | 6 | 0 | 0 | 1 | |||||||
Intron | 5 | 1 | 2 | 2 | ||||||||||
Exon | 8 | 2 | 1 | 4 | 0 | 0 | 1 | |||||||
Replacement | 5 | 1 | 1 | 2 | 0 | 0 | 1 | |||||||
Synonymous | 3 | 1 | 0 | 2 | ||||||||||
adh1 | ||||||||||||||
(n = 25 accessions)† | ||||||||||||||
All | 15 | 9 | 0 | 2 | 0 | 0 | 2 | 1 | 0 | 0 | 0 | 1 | ||
Intron | 7 | 3 | 0 | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | ||
Exon | 8 | 6 | 0 | 0 | 0 | 0 | 1 | 1 | ||||||
Replacement | 5 | 5 | ||||||||||||
Synonymous | 3 | 1 | 0 | 0 | 0 | 0 | 1 | 1 |
Total number of polymorphic sites.
adh1 data from ref. 10.