Table 2.
Number of polymorphic sites at various frequencies in regions of “adh3” and adh1 in wild barley
| Gene | Region | Total* | Number of
polymorphic sites at frequency of
|
|||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | |||
| “adh3” whole sample | ||||||||||||||
| (n = 25 accessions) | ||||||||||||||
| All | 104 | 23 | 6 | 3 | 0 | 1 | 0 | 2 | 0 | 3 | 0 | 1 | 65 | |
| Intron | 56 | 7 | 4 | 2 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 41 | |
| Exon | 48 | 16 | 2 | 1 | 0 | 0 | 0 | 1 | 0 | 3 | 0 | 1 | 24 | |
| Replacement | 22 | 9 | 2 | 1 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 1 | 7 | |
| Synonymous | 26 | 7 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 17 | |
| “adh3” cluster 1 | ||||||||||||||
| (n = 13 accessions) | ||||||||||||||
| All | 28 | 22 | 4 | 0 | 0 | 1 | 1 | |||||||
| Intron | 11 | 7 | 2 | 0 | 0 | 1 | 1 | |||||||
| Exon | 17 | 15 | 2 | |||||||||||
| Replacement | 11 | 9 | 2 | |||||||||||
| Synonymous | 6 | 6 | ||||||||||||
| “adh3” cluster 2 | ||||||||||||||
| (n = 12 accessions) | ||||||||||||||
| All | 13 | 3 | 3 | 6 | 0 | 0 | 1 | |||||||
| Intron | 5 | 1 | 2 | 2 | ||||||||||
| Exon | 8 | 2 | 1 | 4 | 0 | 0 | 1 | |||||||
| Replacement | 5 | 1 | 1 | 2 | 0 | 0 | 1 | |||||||
| Synonymous | 3 | 1 | 0 | 2 | ||||||||||
| adh1 | ||||||||||||||
| (n = 25 accessions)† | ||||||||||||||
| All | 15 | 9 | 0 | 2 | 0 | 0 | 2 | 1 | 0 | 0 | 0 | 1 | ||
| Intron | 7 | 3 | 0 | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | ||
| Exon | 8 | 6 | 0 | 0 | 0 | 0 | 1 | 1 | ||||||
| Replacement | 5 | 5 | ||||||||||||
| Synonymous | 3 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | ||||||
Total number of polymorphic sites.
adh1 data from ref. 10.