Table 3.
Estimates of nucleotide diversity and test statistics for selection at “adh3” and adh1 in wild barley (length of the regions is the average number of bases excluding alignment gaps for all lines)
Gene | Region | Length, bp | θ/bp | π/bp | T | D* | F | F* |
---|---|---|---|---|---|---|---|---|
“adh3” whole sample | ||||||||
(n = 25 accessions) | ||||||||
All | 1,842.8 | 0.0149 | 0.0219 | 1.734† | 0.348 | 0.931 | 0.858 | |
Intron | 921.9 | 0.0161 | 0.0257 | 2.183‡ | 0.929 | 1.599 | 1.437 | |
Exon | 929.1 | 0.0137 | 0.0179 | 1.127 | −0.350 | 0.073 | 0.127 | |
Rep. | 715.0 | 0.0082 | 0.0088 | 0.279 | −0.746 | −0.588 | −0.462 | |
Syn. | 212.1 | 0.0325 | 0.0488 | 1.759† | 0.038 | 0.636 | 0.621 | |
“adh3” cluster 1 | ||||||||
(n = 13 accessions) | ||||||||
All | 1,836.6 | 0.0049 | 0.0030 | −1.544† | −1.843† | −2.367‡ | −1.835† | |
Intron | 917.4 | 0.0039 | 0.0029 | −0.890 | −1.096 | −1.378 | −1.083 | |
Exon | 920.8 | 0.0059 | 0.0031 | −1.847‡ | −2.153† | −2.706‡ | −2.154† | |
Rep. | 703.8 | 0.0050 | 0.0028 | −1.666† | −1.790† | −2.256‡ | −1.826† | |
Syn. | 212.4 | 0.0091 | 0.0043 | −1.755‡ | −2.221‡ | −2.585‡ | −2.178‡ | |
“adh3” cluster 2 | ||||||||
(n = 12 accessions) | ||||||||
All | 1,864.7 | 0.0023 | 0.0024 | 0.094 | 0.492 | 0.385 | 0.402 | |
Intron | 926.8 | 0.0018 | 0.0017 | −0.130 | 0.513 | 0.338 | 0.359 | |
Exon | 938.0 | 0.0028 | 0.0030 | 0.232 | 0.390 | 0.330 | 0.361 | |
Rep. | 721.8 | 0.0023 | 0.0025 | 0.357 | 0.513 | 0.476 | 0.489 | |
Syn. | 217.2 | 0.0046 | 0.0045 | −0.025 | 0.078 | −0.012 | 0.053 | |
adh1 | ||||||||
(n = 25 accessions)§ | ||||||||
All | 1,359.9 | 0.0029 | 0.0021 | −0.926 | −1.705 | −1.828† | −1.582 | |
Intron | 574.2 | 0.0032 | 0.0027 | −0.436 | −0.674 | −0.747 | −0.648 | |
Exon | 786.0 | 0.0027 | 0.0016 | −1.174 | −2.169† | −2.249† | −2.013† | |
Rep. | 606.4 | 0.0022 | 0.0007 | −1.858‡ | −2.890‡ | −3.022‡ | −2.776‡ | |
Syn. | 179.6 | 0.0044 | 0.0049 | 0.247 | −0.192 | −0.109 | −0.071 |
θ, Watterson's estimate; π, Tajima's estimate; T, Tajima's D test; D*, Fu and Li's D test without outgroup information; F, Fu and Li's F test; F*, Fu and Li's F* test.
0.01 < P < 0.05.
P < 0.01.
adh1 data from ref. 10.