Table 3.
Gene | Region | Length, bp | θ/bp | π/bp | T | D* | F | F* |
---|---|---|---|---|---|---|---|---|
“adh3” whole sample | ||||||||
(n = 25 accessions) | ||||||||
All | 1,842.8 | 0.0149 | 0.0219 | 1.734† | 0.348 | 0.931 | 0.858 | |
Intron | 921.9 | 0.0161 | 0.0257 | 2.183‡ | 0.929 | 1.599 | 1.437 | |
Exon | 929.1 | 0.0137 | 0.0179 | 1.127 | −0.350 | 0.073 | 0.127 | |
Rep. | 715.0 | 0.0082 | 0.0088 | 0.279 | −0.746 | −0.588 | −0.462 | |
Syn. | 212.1 | 0.0325 | 0.0488 | 1.759† | 0.038 | 0.636 | 0.621 | |
“adh3” cluster 1 | ||||||||
(n = 13 accessions) | ||||||||
All | 1,836.6 | 0.0049 | 0.0030 | −1.544† | −1.843† | −2.367‡ | −1.835† | |
Intron | 917.4 | 0.0039 | 0.0029 | −0.890 | −1.096 | −1.378 | −1.083 | |
Exon | 920.8 | 0.0059 | 0.0031 | −1.847‡ | −2.153† | −2.706‡ | −2.154† | |
Rep. | 703.8 | 0.0050 | 0.0028 | −1.666† | −1.790† | −2.256‡ | −1.826† | |
Syn. | 212.4 | 0.0091 | 0.0043 | −1.755‡ | −2.221‡ | −2.585‡ | −2.178‡ | |
“adh3” cluster 2 | ||||||||
(n = 12 accessions) | ||||||||
All | 1,864.7 | 0.0023 | 0.0024 | 0.094 | 0.492 | 0.385 | 0.402 | |
Intron | 926.8 | 0.0018 | 0.0017 | −0.130 | 0.513 | 0.338 | 0.359 | |
Exon | 938.0 | 0.0028 | 0.0030 | 0.232 | 0.390 | 0.330 | 0.361 | |
Rep. | 721.8 | 0.0023 | 0.0025 | 0.357 | 0.513 | 0.476 | 0.489 | |
Syn. | 217.2 | 0.0046 | 0.0045 | −0.025 | 0.078 | −0.012 | 0.053 | |
adh1 | ||||||||
(n = 25 accessions)§ | ||||||||
All | 1,359.9 | 0.0029 | 0.0021 | −0.926 | −1.705 | −1.828† | −1.582 | |
Intron | 574.2 | 0.0032 | 0.0027 | −0.436 | −0.674 | −0.747 | −0.648 | |
Exon | 786.0 | 0.0027 | 0.0016 | −1.174 | −2.169† | −2.249† | −2.013† | |
Rep. | 606.4 | 0.0022 | 0.0007 | −1.858‡ | −2.890‡ | −3.022‡ | −2.776‡ | |
Syn. | 179.6 | 0.0044 | 0.0049 | 0.247 | −0.192 | −0.109 | −0.071 |
θ, Watterson's estimate; π, Tajima's estimate; T, Tajima's D test; D*, Fu and Li's D test without outgroup information; F, Fu and Li's F test; F*, Fu and Li's F* test.
0.01 < P < 0.05.
P < 0.01.
adh1 data from ref. 10.