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. 1997 Jun 1;25(11):2241–2243. doi: 10.1093/nar/25.11.2241

Efficient combination of large DNA in vitro: in gel site specific recombination (IGSSR) of PAC fragments containing alpha satellite DNA and the human HPRT gene locus.

D Schindelhauer 1, H J Cooke 1
PMCID: PMC146721  PMID: 9153331

Abstract

In an attempt to combine a cloned genomic copy of a selectable gene with different cloned centromeric sequences to develop mammalian artificial chromosomes (MAC) we used site specific recombination mediated by purified Cre recombinase acting on the loxP sequence in PAC vector DNA. A new method was required to purify highly concentrated, virtually 100% intact PAC DNA which could be stored for a long period. Here we show the efficient linking of linearized PACs containing alpha satellite DNA from chromosomes X and 17 with sizes of 125 and 140 kb, respectively, to a 95 kb restriction fragment derived from a 175 kb PAC containing the intact human HPRT gene locus.

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Selected References

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  1. Abremski K., Hoess R., Sternberg N. Studies on the properties of P1 site-specific recombination: evidence for topologically unlinked products following recombination. Cell. 1983 Apr;32(4):1301–1311. doi: 10.1016/0092-8674(83)90311-2. [DOI] [PubMed] [Google Scholar]
  2. Adams D. E., Bliska J. B., Cozzarelli N. R. Cre-lox recombination in Escherichia coli cells. Mechanistic differences from the in vitro reaction. J Mol Biol. 1992 Aug 5;226(3):661–673. doi: 10.1016/0022-2836(92)90623-r. [DOI] [PubMed] [Google Scholar]
  3. Boyd A. C. Turbo cloning: a fast, efficient method for cloning PCR products and other blunt-ended DNA fragments into plasmids. Nucleic Acids Res. 1993 Feb 25;21(4):817–821. doi: 10.1093/nar/21.4.817. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Buchholz F., Ringrose L., Angrand P. O., Rossi F., Stewart A. F. Different thermostabilities of FLP and Cre recombinases: implications for applied site-specific recombination. Nucleic Acids Res. 1996 Nov 1;24(21):4256–4262. doi: 10.1093/nar/24.21.4256. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Hamilton D. L., Abremski K. Site-specific recombination by the bacteriophage P1 lox-Cre system. Cre-mediated synapsis of two lox sites. J Mol Biol. 1984 Sep 15;178(2):481–486. doi: 10.1016/0022-2836(84)90154-2. [DOI] [PubMed] [Google Scholar]
  6. Hoess R. H., Wierzbicki A., Abremski K. The role of the loxP spacer region in P1 site-specific recombination. Nucleic Acids Res. 1986 Mar 11;14(5):2287–2300. doi: 10.1093/nar/14.5.2287. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Ioannou P. A., Amemiya C. T., Garnes J., Kroisel P. M., Shizuya H., Chen C., Batzer M. A., de Jong P. J. A new bacteriophage P1-derived vector for the propagation of large human DNA fragments. Nat Genet. 1994 Jan;6(1):84–89. doi: 10.1038/ng0194-84. [DOI] [PubMed] [Google Scholar]
  8. Larin Z., Monaco A. P., Lehrach H. Generation of large insert YAC libraries. Methods Mol Biol. 1996;54:1–11. doi: 10.1385/0-89603-313-9:1. [DOI] [PubMed] [Google Scholar]
  9. Mejía J. E., Monaco A. P. Retrofitting vectors for Escherichia coli-based artificial chromosomes (PACs and BACs) with markers for transfection studies. Genome Res. 1997 Feb;7(2):179–186. doi: 10.1101/gr.7.2.179. [DOI] [PubMed] [Google Scholar]
  10. Monaco A. P., Larin Z. YACs, BACs, PACs and MACs: artificial chromosomes as research tools. Trends Biotechnol. 1994 Jul;12(7):280–286. doi: 10.1016/0167-7799(94)90140-6. [DOI] [PubMed] [Google Scholar]
  11. Sauer B. Multiplex Cre/lox recombination permits selective site-specific DNA targeting to both a natural and an engineered site in the yeast genome. Nucleic Acids Res. 1996 Dec 1;24(23):4608–4613. doi: 10.1093/nar/24.23.4608. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Shizuya H., Birren B., Kim U. J., Mancino V., Slepak T., Tachiiri Y., Simon M. Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector. Proc Natl Acad Sci U S A. 1992 Sep 15;89(18):8794–8797. doi: 10.1073/pnas.89.18.8794. [DOI] [PMC free article] [PubMed] [Google Scholar]

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