Skip to main content
Nucleic Acids Research logoLink to Nucleic Acids Research
. 1997 Aug 15;25(16):3275–3280. doi: 10.1093/nar/25.16.3275

The Cryphonectria parasitica plasmid pUG1 contains a large ORF with motifs characteristic of family B DNA polymerases.

E Gobbi 1, A Carpanelli 1, G Firrao 1, R Locci 1
PMCID: PMC146879  PMID: 9241241

Abstract

The isolation and characterization of the circular mitochondrial plasmid pUG1 from the ascomycete Cryphonectria parasitica is described. The entire sequence (4182 bp) was obtained and high similarities to DNA-dependent DNA polymerases were revealed. Strikingly common features with the DNA polymerases encoded by the Neurospora intermedia plasmids Fiji and LaBelle, such as matches to the conserved motifs A and B and the presence of TTD instead of DTD in motif C, were found, suggesting the existence of a distinct group of members of the B DNA family polymerases. These strong similarities between the plasmids might suggest a common origin of the C.parasitica and the Neurospora plasmids.

Full Text

The Full Text of this article is available as a PDF (584.4 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Bell J. A., Monteiro-Vitorello C. B., Hausner G., Fulbright D. W., Bertrand H. Physical and genetic map of the mitochondrial genome of Cryphonectria parasitica Ep155. Curr Genet. 1996 Jun;30(1):34–43. doi: 10.1007/s002940050097. [DOI] [PubMed] [Google Scholar]
  2. Bernad A., Zaballos A., Salas M., Blanco L. Structural and functional relationships between prokaryotic and eukaryotic DNA polymerases. EMBO J. 1987 Dec 20;6(13):4219–4225. doi: 10.1002/j.1460-2075.1987.tb02770.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Chan B. S., Court D. A., Vierula P. J., Bertrand H. The kalilo linear senescence-inducing plasmid of Neurospora is an invertron and encodes DNA and RNA polymerases. Curr Genet. 1991 Aug;20(3):225–237. doi: 10.1007/BF00326237. [DOI] [PubMed] [Google Scholar]
  4. Choi G. H., Nuss D. L. Hypovirulence of chestnut blight fungus conferred by an infectious viral cDNA. Science. 1992 Aug 7;257(5071):800–803. doi: 10.1126/science.1496400. [DOI] [PubMed] [Google Scholar]
  5. Court D. A., Bertrand H. Genetic organization and structural features of maranhar, a senescence-inducing linear mitochondrial plasmid of Neurospora crassa. Curr Genet. 1992 Nov;22(5):385–397. doi: 10.1007/BF00352440. [DOI] [PubMed] [Google Scholar]
  6. Devereux J., Haeberli P., Smithies O. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):387–395. doi: 10.1093/nar/12.1part1.387. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Fox T. D. Natural variation in the genetic code. Annu Rev Genet. 1987;21:67–91. doi: 10.1146/annurev.ge.21.120187.000435. [DOI] [PubMed] [Google Scholar]
  8. Griffiths A. J. Fungal senescence. Annu Rev Genet. 1992;26:351–372. doi: 10.1146/annurev.ge.26.120192.002031. [DOI] [PubMed] [Google Scholar]
  9. Griffiths A. J. Natural plasmids of filamentous fungi. Microbiol Rev. 1995 Dec;59(4):673–685. doi: 10.1128/mr.59.4.673-685.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Hänfler J., Teepe H., Weigel C., Kruft V., Lurz R., Wöstemeyer J. Circular extrachromosomal DNA codes for a surface protein in the (+) mating type of the zygomycete Absidia glauca. Curr Genet. 1992 Oct;22(4):319–325. doi: 10.1007/BF00317929. [DOI] [PubMed] [Google Scholar]
  11. Ito J., Braithwaite D. K. Compilation and alignment of DNA polymerase sequences. Nucleic Acids Res. 1991 Aug 11;19(15):4045–4057. doi: 10.1093/nar/19.15.4045. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Kempken F. Horizontal transfer of a mitochondrial plasmid. Mol Gen Genet. 1995 Jul 22;248(1):89–94. doi: 10.1007/BF02456617. [DOI] [PubMed] [Google Scholar]
  13. Kempken F., Meinhardt F., Esser K. In organello replication and viral affinity of linear, extrachromosomal DNA of the ascomycete Ascobolus immersus. Mol Gen Genet. 1989 Sep;218(3):523–530. doi: 10.1007/BF00332419. [DOI] [PubMed] [Google Scholar]
  14. Kubelik A. R., Kennell J. C., Akins R. A., Lambowitz A. M. Identification of Neurospora mitochondrial promoters and analysis of synthesis of the mitochondrial small rRNA in wild-type and the promoter mutant [poky]. J Biol Chem. 1990 Mar 15;265(8):4515–4526. [PubMed] [Google Scholar]
  15. Kuiper M. T., Lambowitz A. M. A novel reverse transcriptase activity associated with mitochondrial plasmids of Neurospora. Cell. 1988 Nov 18;55(4):693–704. doi: 10.1016/0092-8674(88)90228-0. [DOI] [PubMed] [Google Scholar]
  16. Lecellier G., Silar P. Rapid methods for nucleic acids extraction from Petri dish-grown mycelia. Curr Genet. 1994 Feb;25(2):122–123. doi: 10.1007/BF00309536. [DOI] [PubMed] [Google Scholar]
  17. Li Q., Nargang F. E. Two Neurospora mitochondrial plasmids encode DNA polymerases containing motifs characteristic of family B DNA polymerases but lack the sequence Asp-Thr-Asp. Proc Natl Acad Sci U S A. 1993 May 1;90(9):4299–4303. doi: 10.1073/pnas.90.9.4299. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Martin F. N. Characterization of circular mitochondrial plasmids in three Pythium species. Curr Genet. 1991 Jul;20(1-2):91–97. doi: 10.1007/BF00312771. [DOI] [PubMed] [Google Scholar]
  19. Oeser B., Tudzynski P. The linear mitochondrial plasmid pClK1 of the phytopathogenic fungus Claviceps purpurea may code for a DNA polymerase and an RNA polymerase. Mol Gen Genet. 1989 May;217(1):132–140. doi: 10.1007/BF00330952. [DOI] [PubMed] [Google Scholar]
  20. Osawa S., Jukes T. H., Watanabe K., Muto A. Recent evidence for evolution of the genetic code. Microbiol Rev. 1992 Mar;56(1):229–264. doi: 10.1128/mr.56.1.229-264.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Paillard M., Sederoff R. R., Levings C. S. Nucleotide sequence of the S-1 mitochondrial DNA from the S cytoplasm of maize. EMBO J. 1985 May;4(5):1125–1128. doi: 10.1002/j.1460-2075.1985.tb03749.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Pande S., Lemire E. G., Nargang F. E. The mitochondrial plasmid from Neurospora intermedia strain Labelle-1b contains a long open reading frame with blocks of amino acids characteristic of reverse transcriptases and related proteins. Nucleic Acids Res. 1989 Mar 11;17(5):2023–2042. doi: 10.1093/nar/17.5.2023. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Pearson W. R., Lipman D. J. Improved tools for biological sequence comparison. Proc Natl Acad Sci U S A. 1988 Apr;85(8):2444–2448. doi: 10.1073/pnas.85.8.2444. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Polashock J. J., Hillman B. I. A small mitochondrial double-stranded (ds) RNA element associated with a hypovirulent strain of the chestnut blight fungus and ancestrally related to yeast cytoplasmic T and W dsRNAs. Proc Natl Acad Sci U S A. 1994 Aug 30;91(18):8680–8684. doi: 10.1073/pnas.91.18.8680. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Robison M. M., Royer J. C., Horgen P. A. Homology between mitochondrial DNA of Agaricus bisporus and an internal portion of a linear mitochondrial plasmid of Agaricus bitorquis. Curr Genet. 1991 Jun;19(6):495–502. doi: 10.1007/BF00312742. [DOI] [PubMed] [Google Scholar]
  26. Yuewang W., Yang X., Griffiths A. J. Structure of a Gelasinospora linear plasmid closely related to the kalilo plasmid of Neurospora intermedia. Curr Genet. 1996 Jan;29(2):150–158. [PubMed] [Google Scholar]

Articles from Nucleic Acids Research are provided here courtesy of Oxford University Press

RESOURCES