Abstract
The isolation and characterization of the circular mitochondrial plasmid pUG1 from the ascomycete Cryphonectria parasitica is described. The entire sequence (4182 bp) was obtained and high similarities to DNA-dependent DNA polymerases were revealed. Strikingly common features with the DNA polymerases encoded by the Neurospora intermedia plasmids Fiji and LaBelle, such as matches to the conserved motifs A and B and the presence of TTD instead of DTD in motif C, were found, suggesting the existence of a distinct group of members of the B DNA family polymerases. These strong similarities between the plasmids might suggest a common origin of the C.parasitica and the Neurospora plasmids.
Full Text
The Full Text of this article is available as a PDF (584.4 KB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Bell J. A., Monteiro-Vitorello C. B., Hausner G., Fulbright D. W., Bertrand H. Physical and genetic map of the mitochondrial genome of Cryphonectria parasitica Ep155. Curr Genet. 1996 Jun;30(1):34–43. doi: 10.1007/s002940050097. [DOI] [PubMed] [Google Scholar]
- Bernad A., Zaballos A., Salas M., Blanco L. Structural and functional relationships between prokaryotic and eukaryotic DNA polymerases. EMBO J. 1987 Dec 20;6(13):4219–4225. doi: 10.1002/j.1460-2075.1987.tb02770.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chan B. S., Court D. A., Vierula P. J., Bertrand H. The kalilo linear senescence-inducing plasmid of Neurospora is an invertron and encodes DNA and RNA polymerases. Curr Genet. 1991 Aug;20(3):225–237. doi: 10.1007/BF00326237. [DOI] [PubMed] [Google Scholar]
- Choi G. H., Nuss D. L. Hypovirulence of chestnut blight fungus conferred by an infectious viral cDNA. Science. 1992 Aug 7;257(5071):800–803. doi: 10.1126/science.1496400. [DOI] [PubMed] [Google Scholar]
- Court D. A., Bertrand H. Genetic organization and structural features of maranhar, a senescence-inducing linear mitochondrial plasmid of Neurospora crassa. Curr Genet. 1992 Nov;22(5):385–397. doi: 10.1007/BF00352440. [DOI] [PubMed] [Google Scholar]
- Devereux J., Haeberli P., Smithies O. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):387–395. doi: 10.1093/nar/12.1part1.387. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fox T. D. Natural variation in the genetic code. Annu Rev Genet. 1987;21:67–91. doi: 10.1146/annurev.ge.21.120187.000435. [DOI] [PubMed] [Google Scholar]
- Griffiths A. J. Fungal senescence. Annu Rev Genet. 1992;26:351–372. doi: 10.1146/annurev.ge.26.120192.002031. [DOI] [PubMed] [Google Scholar]
- Griffiths A. J. Natural plasmids of filamentous fungi. Microbiol Rev. 1995 Dec;59(4):673–685. doi: 10.1128/mr.59.4.673-685.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hänfler J., Teepe H., Weigel C., Kruft V., Lurz R., Wöstemeyer J. Circular extrachromosomal DNA codes for a surface protein in the (+) mating type of the zygomycete Absidia glauca. Curr Genet. 1992 Oct;22(4):319–325. doi: 10.1007/BF00317929. [DOI] [PubMed] [Google Scholar]
- Ito J., Braithwaite D. K. Compilation and alignment of DNA polymerase sequences. Nucleic Acids Res. 1991 Aug 11;19(15):4045–4057. doi: 10.1093/nar/19.15.4045. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kempken F. Horizontal transfer of a mitochondrial plasmid. Mol Gen Genet. 1995 Jul 22;248(1):89–94. doi: 10.1007/BF02456617. [DOI] [PubMed] [Google Scholar]
- Kempken F., Meinhardt F., Esser K. In organello replication and viral affinity of linear, extrachromosomal DNA of the ascomycete Ascobolus immersus. Mol Gen Genet. 1989 Sep;218(3):523–530. doi: 10.1007/BF00332419. [DOI] [PubMed] [Google Scholar]
- Kubelik A. R., Kennell J. C., Akins R. A., Lambowitz A. M. Identification of Neurospora mitochondrial promoters and analysis of synthesis of the mitochondrial small rRNA in wild-type and the promoter mutant [poky]. J Biol Chem. 1990 Mar 15;265(8):4515–4526. [PubMed] [Google Scholar]
- Kuiper M. T., Lambowitz A. M. A novel reverse transcriptase activity associated with mitochondrial plasmids of Neurospora. Cell. 1988 Nov 18;55(4):693–704. doi: 10.1016/0092-8674(88)90228-0. [DOI] [PubMed] [Google Scholar]
- Lecellier G., Silar P. Rapid methods for nucleic acids extraction from Petri dish-grown mycelia. Curr Genet. 1994 Feb;25(2):122–123. doi: 10.1007/BF00309536. [DOI] [PubMed] [Google Scholar]
- Li Q., Nargang F. E. Two Neurospora mitochondrial plasmids encode DNA polymerases containing motifs characteristic of family B DNA polymerases but lack the sequence Asp-Thr-Asp. Proc Natl Acad Sci U S A. 1993 May 1;90(9):4299–4303. doi: 10.1073/pnas.90.9.4299. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Martin F. N. Characterization of circular mitochondrial plasmids in three Pythium species. Curr Genet. 1991 Jul;20(1-2):91–97. doi: 10.1007/BF00312771. [DOI] [PubMed] [Google Scholar]
- Oeser B., Tudzynski P. The linear mitochondrial plasmid pClK1 of the phytopathogenic fungus Claviceps purpurea may code for a DNA polymerase and an RNA polymerase. Mol Gen Genet. 1989 May;217(1):132–140. doi: 10.1007/BF00330952. [DOI] [PubMed] [Google Scholar]
- Osawa S., Jukes T. H., Watanabe K., Muto A. Recent evidence for evolution of the genetic code. Microbiol Rev. 1992 Mar;56(1):229–264. doi: 10.1128/mr.56.1.229-264.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Paillard M., Sederoff R. R., Levings C. S. Nucleotide sequence of the S-1 mitochondrial DNA from the S cytoplasm of maize. EMBO J. 1985 May;4(5):1125–1128. doi: 10.1002/j.1460-2075.1985.tb03749.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Pande S., Lemire E. G., Nargang F. E. The mitochondrial plasmid from Neurospora intermedia strain Labelle-1b contains a long open reading frame with blocks of amino acids characteristic of reverse transcriptases and related proteins. Nucleic Acids Res. 1989 Mar 11;17(5):2023–2042. doi: 10.1093/nar/17.5.2023. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Pearson W. R., Lipman D. J. Improved tools for biological sequence comparison. Proc Natl Acad Sci U S A. 1988 Apr;85(8):2444–2448. doi: 10.1073/pnas.85.8.2444. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Polashock J. J., Hillman B. I. A small mitochondrial double-stranded (ds) RNA element associated with a hypovirulent strain of the chestnut blight fungus and ancestrally related to yeast cytoplasmic T and W dsRNAs. Proc Natl Acad Sci U S A. 1994 Aug 30;91(18):8680–8684. doi: 10.1073/pnas.91.18.8680. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Robison M. M., Royer J. C., Horgen P. A. Homology between mitochondrial DNA of Agaricus bisporus and an internal portion of a linear mitochondrial plasmid of Agaricus bitorquis. Curr Genet. 1991 Jun;19(6):495–502. doi: 10.1007/BF00312742. [DOI] [PubMed] [Google Scholar]
- Yuewang W., Yang X., Griffiths A. J. Structure of a Gelasinospora linear plasmid closely related to the kalilo plasmid of Neurospora intermedia. Curr Genet. 1996 Jan;29(2):150–158. [PubMed] [Google Scholar]
