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. 2006 Mar 31;90(12):4337–4344. doi: 10.1529/biophysj.106.081539

TABLE 2.

Occurrences of intramolecular H-bonds evaluated from the present simulations

Sugar Donor H Acceptor O Distance [nm] Occurrence %
K HO3 O5 0.206 14.9
K HO1 O2 0.191 48.2
S HO1 O5 0.194 38.7
N HO4 O2 0.194 49.5
N HO2 O5 0.208 21.8
L HO4 O5 0.192 42.1
M HO2 O3 0.189 9.8
M HO3 O2 0.191 32.3
C HO3 O5 0.184 69.7
I
G

Only H-bonds with occurrences >5% are reported. An H-bond is assumed to be present in a specific configuration if the hydrogen-acceptor distance is shorter than 0.25 nm (the corresponding distance averaged over all configurations is indicated) and the donor-hydrogen-acceptor angle is larger than 135°. These H-bonds are also reported graphically in Fig. 1. The codes used for the disaccharides refer to Fig. 1.