TABLE 2.
Occurrences of intramolecular H-bonds evaluated from the present simulations
| Sugar | Donor H | Acceptor O | Distance [nm] | Occurrence % |
|---|---|---|---|---|
| K | HO3′ | O5 | 0.206 | 14.9 |
| K | HO1′ | O2 | 0.191 | 48.2 |
| S | HO1′ | O5 | 0.194 | 38.7 |
| N | HO4′ | O2 | 0.194 | 49.5 |
| N | HO2′ | O5 | 0.208 | 21.8 |
| L | HO4′ | O5 | 0.192 | 42.1 |
| M | HO2 | O3′ | 0.189 | 9.8 |
| M | HO3′ | O2 | 0.191 | 32.3 |
| C | HO3′ | O5 | 0.184 | 69.7 |
| I | — | — | — | — |
| G | — | — | — | — |
Only H-bonds with occurrences >5% are reported. An H-bond is assumed to be present in a specific configuration if the hydrogen-acceptor distance is shorter than 0.25 nm (the corresponding distance averaged over all configurations is indicated) and the donor-hydrogen-acceptor angle is larger than 135°. These H-bonds are also reported graphically in Fig. 1. The codes used for the disaccharides refer to Fig. 1.