TABLE 3.
Timescale (in nanoseconds) associated with transitions occurring around the dihedral angles
and the different χn and χn′
Sugar | ![]() |
![]() |
χ2 | χ3 | χ4 | χ6 | χ1′ | χ2′ | χ3′ | χ4′ | χ6′ |
---|---|---|---|---|---|---|---|---|---|---|---|
K | 0.82 | 0.83 | 0.04 | 0.03 | 0.08 | 0.04 | 0.86 | — | 0.04 | 0.11 | 0.03 |
S | 0.88 | 0.70 | 0.04 | 0.03 | 0.08 | 0.04 | 2.94 | — | 0.04 | 0.09 | 0.03 |
N | 0.89 | 0.89 | 0.03 | 0.03 | 0.08 | 0.03 | 0.82 | 0.03 | — | 0.16 | 0.03 |
L | 0.83 | 0.64 | 0.04 | 0.03 | 0.09 | 0.04 | 0.68 | 0.03 | — | 0.25 | 0.03 |
M | 1.14 | 0.68 | 0.03 | 0.03 | 0.08 | 0.04 | 1.22 | 0.03 | 0.04 | — | 0.04 |
C | 1.43 | 0.53 | 0.04 | 0.03 | 0.09 | 0.04 | 1.22 | 0.03 | 0.17 | — | 0.04 |
I | 1.35 | 0.86 | 0.03 | 0.03 | 0.09 | 0.03 | 0.88 | 0.03 | 0.03 | 0.11 | — |
G | 1.00 | 0.61 | 0.04 | 0.03 | 0.10 | 0.03 | 0.55 | 0.02 | 0.03 | 0.09 | — |
Note that = O5-C5-C6-O6 and
= O5′-C5′-C6′-O6′, with O6′ = O1 for a (1→6)-linkage (I, G); χn = Cn−1-Cn-On-HOn (n = 2,3,4,6; nonreducing residue) and χn′ = Cn−1′-Cn′-On′-HOn′ (n = 1,2,3,4,6; reducing residue). The timescales represent the average time spent in the different dihedral-angle wells centered at staggered conformations (intervals [−120°; 0°], [0°; 120°], and [120°; −120°]). Changes of well occurring for <5 ps (allowed excursion time) are not counted as transitions. The codes used for the disaccharides refer to Fig. 1.