TABLE 2.
Influenza A viruses with highest nucleotide sequence identity to H3N1 swine influenza virus (A/Swine/Minnesota/00395/2004) as determined by BLAST search in the Influenza Sequence Databasea
| Gene | Identity (%) | Virus designation | Subtype | GenBank accession no. |
|---|---|---|---|---|
| HA | 99.4 | A/Swine/Iowa/00213/2003 | H3N2 | ISDN49163 |
| 98.4 | A/Swine/Iowa/00186/2003 | H3N2 | ISDN49100 | |
| 98.0 | A/Turkey/North Carolina/12344/03 | H3N2 | AY779253 | |
| NA | 93.2 | A/Swine/Quebec/5393/91 | H1N1 | U86145 |
| 92.4 | A/Wisconsin/4754/94 | H1N1 | U53166 | |
| PB1 | 98.7 | A/Wisconsin/10/98 | H1N1 | AF342823 |
| 98.2 | A/Swine/Minnesota/593/99 | H3N2 | AF251429 | |
| 98.2 | A/Duck/North Carolina/91347/01 | H1N2 | AY233388 | |
| PB2 | 97.5 | A/Swine/Korea/CY02/02 | H1N2 | AY129163 |
| 97.4 | A/Swine/Illinois/100084/01 | H1N2 | AF455738 | |
| PA | 97.0 | A/Swine/Minnesota/593/99 | H3N2 | AF251433 |
| 96.7 | A/Duck/North Carolina/91347/01 | H1N2 | AY233389 | |
| NP | 98.3 | A/Swine/Ohio/891/01 | H1N2 | AY129159 |
| 98.3 | A/Swine/Korea/CY02/02 | H1N2 | AF455699 | |
| M | 98.8 | A/Swine/Indiana/14810-S/01 | H1N2 | AY060071 |
| 98.6 | A/Turkey/Minneasota/764-2/03 | H3N2 | AY779258 | |
| 98.4 | A/Wisconsin/10/98 | H1N1 | AF342818 | |
| NS | 98.4 | A/Swine/Indiana/14810-S/01 | H1N2 | AY060136 |
| 98.2 | A/Swine/Korea/CY02/01 | H1N2 | AY129160 |
a
http://www.flu.lanl.gov/.