TABLE 2.
Library | Parameter | Parametric model
|
Nonparametric estimator
|
||||
---|---|---|---|---|---|---|---|
Inverse Gaussian | Lognormal | Pareto | Two-mixed exponential | ACE | ACE1 | ||
FV18 | Phylotype estimate | 63.8 | 65.4 | 63.0 | 68.4 | 65.5 | 85.4 |
SE | 14.6 | 20.8 | 11.8 | 14.9 | 13.1 | 28.6 | |
Naïve goodness of fit | 0.2595 | 0.1877 | 0.1889 | 0.3615 | NPb | NP | |
Asymptotically correct goodness of fit | 0.3613 | 0.3798 | 0.3739 | NAc | NP | NP | |
FV23 | Phylotype estimate | 146.5 | 138.9 | 129.7 | 143.2 | 118.5 | 167.6 |
SE | 46.2 | 56.6 | 29.8 | 47.1 | 22.7 | 53.6 | |
Naïve goodness of fit | 0.4884 | 0.3744 | 0.3006 | 0.5071 | NP | NP | |
Asymptotically correct goodness of fit | 0.4616 | 0.4103 | 0.3607 | 0.4094 | NP | NP | |
FV36 | Phylotype estimate | 27.4 | 27.7 | 27.6 | 31.9 | 26.3 | 30.7 |
SE | 8.1 | 10.7 | 6.4 | 11.7 | 6.5 | 11.5 | |
Naïve goodness of fit | 0.1362 | 0.1017 | 0.0866 | 0.1458 | NP | NP | |
Asymptotically correct goodness of fit | NA | NA | NA | NA | NP | NP |
Phylotype groups are based on 98.0% sequence similarity. Four of seven parametric models tested gave statistically well-supported results for all data sets.
NP, estimation not possible.
NA, not available.