TABLE 1.
Properties of candidate agarases identified in the S. degradans 2-40 genome
| Gene | GenBank accession no. | Size of predicted product (kDa)a | Representative homologb | GenBank accession no. of homolog | % Sc | % Ic |
|---|---|---|---|---|---|---|
| aga50A | ZP_00315251 | 87 | β-Agarase of Vibrio sp. strain JT0107 | S46651 | 62 | 44 |
| aga16B | AAT67062 | 64 | Agarase of Pseudomonas sp. strain ND137 | BAB88713 | 54 | 69 |
| aga86C | ZP_000315652 | 86 | β-Agarase of Pseudoalteromonas atlantica | AAA25696 | 38 | 55 |
| aga50D | ZP_000315360 | 89 | β-Agarase of Vibrio sp. strain JT0107 | S46651 | 43 | 60 |
| aga86E | ZP_000315657 | 146 | β-Agarase of Microbulbifer sp. strain JAMB-A94 | BAD86832 | 60 | 72 |
a
As estimated by the ExPASy peptide mass tool.
b
As determined by a BLASTP search of the nonredundant database.
c
Percent similarity (% S) and percent identity (% I) as calculated by BLASTP alignment.