Table 2.
Known DNA binding motifs and the reported qualities of the protein–DNA binding data
| TF | Binding site | Source | Binding data quality |
|---|---|---|---|
| Fkh2 | GTMAACAA | 13 | Acceptable (300) |
| Fkh1 | GTMAACAA | 13 | Poor (376) |
| Swi4 | CGCSAAA | TRANSFAC, ref. 13 | Good (289) |
| Mcm1 | CCNNNWWRGG | TRANSFAC, SCPD | Good (225) |
| Ace2 | GCTGGT | TRANSFAC, SCPD | Good (179) |
| Ndd1 | CCNRWWNNGG | 13 | Good (176) |
| Mbp1 | WCGCGW | TRANSFAC, ref. 13 | Good (223) |
| Swi5 | KGCTGR | TRANSFAC, SCPD, ref. 13 | Good (279) |
TRANSFAC, transcription factor database (www.gene-regulation.com/pub/databases.htm). SCPD, promoter database of Saccharomyces cerevisiae (http://rulai.cshl.edu/SCPD).