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. 1977 Nov;20(2):153–168. doi: 10.1016/S0006-3495(77)85541-0

An extrapolation method for reducing equilibration times in sedimentation equilibrium experiments.

J J Correia, D A Yphantis
PMCID: PMC1473379  PMID: 911979

Abstract

We present a detailed investigation of the use of an extrapolation technique to decrease running times of sedimentation equilibrium experiments. If concentration profiles are available at time delta tau, 2delta tau, 3delta tau,...., cn(r) = c(r, n delta tau), then the Aitken transformation replaces the cn(r) + ĉn(r) = [cn + 1(r) cn - 1(r) - c2n(r)]/[cn + 1(r) + cn - 1(r) - 2cn(r)]. We show that the ĉn(r) converge to the equilibrium values c infinity (r) much more quickly than the cn(r). Savings in time are shown to range from a factor of approximately 2 for meniscus depletion experiments to factors of between 4 and 8 for lower speeds or smaller molecular weights. It is also shown that the technique is quite sensitive to noise, so that an accurate optical system is required to allow its optimal use.

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Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Baurain R. M., Moreux J. C., Lamy F. Rapid preequilibrium determination of molecular weights in the ultracentrifuge. Biochim Biophys Acta. 1973 Jan 25;295(1):18–29. doi: 10.1016/0005-2795(73)90069-x. [DOI] [PubMed] [Google Scholar]
  2. Griffith O. M. Rapid sedimentation equilibrium in the ultracentrifuge using a modified synthetic boundary cell with step concentrations. Anal Biochem. 1967 May;19(2):243–248. doi: 10.1016/0003-2697(67)90159-5. [DOI] [PubMed] [Google Scholar]
  3. Hexner P. E., Radford L. E., Beams J. W. ACHIEVEMENT OF SEDIMENTATION EQUILIBRIUM. Proc Natl Acad Sci U S A. 1961 Nov;47(11):1848–1852. doi: 10.1073/pnas.47.11.1848. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. WEISS G. H., YPHANTIS D. A. RECTANGULAR APPROXIMATION FOR CONCENTRATION-DEPENDENT SEDIMENTATION IN THE ULTRACENTRIFUGE. J Chem Phys. 1965 Mar 15;42:2117–2123. doi: 10.1063/1.1696254. [DOI] [PubMed] [Google Scholar]
  5. YPHANSTIS D. A. Rapid determination of molecular weights of peptides and preteins. Ann N Y Acad Sci. 1960 Aug 31;88:586–601. doi: 10.1111/j.1749-6632.1960.tb20055.x. [DOI] [PubMed] [Google Scholar]
  6. YPHANTIS D. A. EQUILIBRIUM ULTRACENTRIFUGATION OF DILUTE SOLUTIONS. Biochemistry. 1964 Mar;3:297–317. doi: 10.1021/bi00891a003. [DOI] [PubMed] [Google Scholar]

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