Table 3.
Nomenclature, Amplification Primers, Probes, and Genomic Locations of SNPs Used in the Present Study
| Amplification Primer(5′→3′) | |||||||
| Marker | dbSNP ID | Forward | Reverse | Variation | Single Base Extension Primer | Probe Stranda | NCBI Build 34 Position |
| SNP25 | AGCGAGGKGCCCGCCCGGCGA | GGAGATGGGGAAGGCTCCCCACT | C/G | CGACGCCGCGAGTCCRAGAGGGGAGCC | F | 31344254 | |
| SNP38 | AGCGAGGKGCCCGCCCGGCGA | GGAGATGGGGAAGGCTCCCCACT | C/A | CCGCGAGTCCRAGAGGGGAGCCSCGGG | F | 31344249 | |
| SNP39 | rs1131123 | AGCGAGGKGCCCGCCCGGCGA | GGAGATGGGGAAGGCTCCCCACT | C/A | CGCGGCTACTAYAACCAGAGCGAGG | F | 31344128 |
| SNP26 | rs1131118 | AGCGAGGKGCCCGCCCGGCGA | GGAGATGGGGAAGGCTCCCCACT | T/A | CGGGGCCAGGKTCTCACAYCMTCCAG | F | 31343856 |
| SNP36 | rs17416863 | AGCGAGGKGCCCGCCCGGCGA | GGAGATGGGGAAGGCTCCCCACT | C/G | GWGGATGTNYGGCTGCGACSTGGGGCC | F | 31343830 |
| SNP40 | rs17839985 | AGCGAGGKGCCCGCCCGGCGA | GGAGATGGGGAAGGCTCCCCACT | C/T | CAAGGATTACATCGCCCTGAAYGAGGA | F | 31343758 |
| SNP37 | AGCGAGGKGCCCGCCCGGCGA | GGAGATGGGGAAGGCTCCCCACT | C/G | CACGCACYYKCCCTCCAGGTAGGCTCT | R | 31343677 | |
| SNP66 | rs887464 | GTAAGCAGGCAGGTGAGAGG | AGGGCCTCATCTAGGCTCAT | G/A | AAATCTCTTCATCCCTGTTCTTCACAT | R | 31252187 |
| SNP67 | rs3132514 | GATCCCTTTGACGTGAGCAT | CTTGAACTCAGGCAGCAGAG | G/A | GGGTGCAGTGAGCTGAGATCGAGCCAC | R | 31249026 |
| SNP68 | rs3094191 | AGGTGTGGGAGTGATTCCAG | GATGGGGCCTTGCTATGTTA | G/A | TGGTCTTGAATTCCTGTCCTCAAGAAA | R | 31245179 |
| SNP69 | TGCTGGTCTTGAACTCCTGA | CATTCACCCATTCCCTGTTC | G/T | TTCTAACCTTCATAACCTGACAGGTGT | F | 31240385 | |
| SNP70 | rs7750641 | AGCAAAGTCCTGAGGCTTGA | CCCCACCATCAACAGGTACT | G/A | GACCTCCTGACCTTTGGCCCTGAAGGG | R | 31235557 |
| SNP71 | rs3130455 | CCTCCTCCCAACAGAGTGAA | CGAACGTCCCTTACCAACC | T/A | GCGGGGCCGGGAGCGAGGCGTAGGGGG | F | 31232260 |
| SNP72 | rs3094662 | GCCCTGCTTCCCTTTCTAGT | AGGCTGTCAGTTCCATCCAC | G/T | GGGTATTGTGGAGGGCAGTGAGGAAGG | F | 31228208 |
| SNP74 | rs6929464 | AGGTCTGGACCCCTCAAACT | GGTAGGAGGATCCCTTGAGC | G/A | AACTGACCCTCAAGCCAATAACGTGGA | F | 31204184 |
| SNP75 | rs6909321 | TCTTGGTCACCAGAGGAACC | CTTCCCTGTGGACTCACCTC | C/T | GCACAGGAAAAACAACTCAGAGGACAT | F | 31199434 |
| SNP1 | rs3095318 | CACCCAAGTGTGGAAGAAAAAGC | TACCTGAGGCGACCATACAGTGAG | T/A | GTGTGGGTGGGCACGGGATG | F | 31194387 |
| SNP34 | rs7742033 | CCGATGACTGAGATAAGGCAGAAAG | GTTCCTGGCTTAAAAGATCCTGC | C/T | AGCCGCTGGAGTCACCCTTCCCAGTGA | R | 31191469 |
| SNP2 | rs3130984 | GCTCCATTTCCAGTGCCAGAAG | TTGGTGAAGTAGCCCACAGGRTAG | G/A | GGGAGCAGCAGCTCTCACTCGGGAA | R | 31191207 |
| SNP9b | GCTCCATTTCCAGTGCCAGAAG | TTGGTGAAGTAGCCCACAGGRTAG | C/A | TCACTCGGGAARCAGCGGCTCTCACTCGGG | F | 31191186 | |
| SNP3 | rs707913 | GCTCCATTTCCAGTGCCAGAAG | TTGGTGAAGTAGCCCACAGGRTAG | C/T | CTGGACAAAGCTCTTCCTCTTCCCARACCT | F | 31191030 |
| SNP35 | GCAAATACTTCTCCAGCAACCCC | AGTGTATGTGCTTGTTTGTGCCC | G/A | TCTCCCTCCAGTTCTCGAGTCCCCAGC | F | 31190434 | |
| SNP4 | rs1042127 | GGCAAATACTTCTCCAGCAACCC | ACAGACATGCAAGGGTGACCAG | G/T | GTTCTAGCATTTCCAGCAGC | F | 31190413 |
| SNP5 | rs3132554 | GGCAAATACTTCTCCAGCAACCC | ACAGACATGCAAGGGTGACCAG | C/T | AGCACTGCCGCAGGGATGGTAGGGT | R | 31190406 |
| SNP6 | rs3130981 | GCAAATACTTCTCCAGCAACCCC | AGTGTATGTGCTTGTTTGTGCCC | G/A | GAAGTTTTCCTACCCCAAGGAGAGTTACTC | F | 31190056 |
| SNP76 | rs3734852 | CTTGCTATCCCCATCCTTCA | TGCAGGTGCCATCTCAATTA | C/T | CTGGAACAGCTCTCCCACCTGGCCGGG | R | 31185050 |
| SNP77 | rs7756290 | GATCTGACCCAGTGCAGTCC | TGCTGTGGTTTTGCAGACTC | T/A | CCAGTGACGGCCACAGGGGTGCTTGTG | F | 31176558 |
| SNP78 | rs12214039 | AGAAGAGACGGGGGTCTCAC | CCTTGGAAGGATGTTTGGAA | C/A | CAAGGTGGKCAGATCACCTGAGATCAG | R | 31166604 |
a
F = forward; R = reverse.
b
This marker is an AAG indel in exon 2 of CDSN but was typed as a SNP.