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. 2006 Mar 17;78(5):878–883. doi: 10.1086/503632

Table 5.

dbSNP Accession Numbers and Details for the Analyzed SNPs

Primers
Chromosome and dbSNP Accession Number Alleles Allele Frequencya Heterozygositya Locationb Method Forward Reverse PCR
Length
(bp)
Enzyme Restriction Fragment Lengths
(bp)
10p:
rs3898062 A/G NK NK 37143715 Enzyme digestion AGGAGAATGGCGTGAATC GATATTATCATGGAGGCTTTAGG 344 MseI A: 29, 42, 117, 156; G: 42, 146, 156
rs2488748 C/G G: .951; C: .049 .095 37145779 Enzyme digestion GTGGCAAGAAAGCTAGTAAGT TCAAATAGCAGAGTCGCA 320 Fnu4HI C: 81, 239; G: 58, 81, 181
rs12257945 A/G NK NK 37147006 Sequencing TTGTATTAGAGGAACCCGAAGCA GGAGCCAGTGTAACACGGTAGAT 324
rs12572077 A/C A: .472; C: .528 .498/.166 37147261/37147272 Sequencing CATCTTTTCCCCACCATAGTGTT CTCAGCCACAGATTCAAGTTCC 272
rs2695081 G/C G: .092; C: .908
rs4934835 G/C NK NK 37147530 Sequencing AGGCTGCTCAAATAAACACGTGAA GTGGTGGTGTACCCGTGGTC 224
rs11010897 A/G
NK
NK
37147709
Enzyme digestion
GTACACCACCACAGCTAATG
GTTGGCTATAATACGGAGTTCTA
354
AluI
A: 14, 108, 232; G: 14, 340
Breakpoint
rs2463226 A/T NK NK 37148241 Sequencing CAAGGATCTTCTTTTACCAGTTA AATGAAACTAATTTTATCATAGGCT 155
rs10827731 C/T T: .127; C: .873 .222 37148704 Sequencing GCACCAATATAAAAATGACTCAAA CTCAAGAGCAGCCAGAGTG 170
rs11817755 G/T NK NK 37148915 Enzyme digestion GAGGTGTGGAAGGAGAGGCGCAGGT AGCTGAGGCCCGGCAAGAATTTGAGT 239 AluI G: 2, 20, 74, 143; T: 2, 20, 60, 74, 83
rs3867222 C/T C: .444; A: .556 .494 37151520 Enzyme digestion GTTCCATCACAGGTCATCTT CAATAAAATGTTGGGCTATTAAA 332 Tsp45I C: 332; T: 83, 249
rs2490841 G/T G: .134; T: .866 .232 37152375 Enzyme digestion TGGCTGTGTTTTCAGATTGG GAGAGGGAAAGAGCAATGACA 272 AluI G: 78, 194; T: 272
rs16851 C/T C: .022; T: .978 .042 59743596 Enzyme digestion TATCTACACATTCCATTATTCCC CATAATATATGTCAGGCGTTTG 195 TaqI C:44, 151; T:195
rs11818916 A/C NK NK 59744939 Enzyme digestion TGGATGTTTGATGGAGTTGGTAGTTTTG GTAGTGTCTGCTGGGTTCACCGAA 199 Tsp45I A: 61, 138; C: 199
rs2486489 G/T G: .023; T: .977 .046 59746059 Sequencing TTCCCCCACAAAACATCTCAACTG TGGTTTCCAGCTAGTAGATTTGAATCCA 221
rs12248484 A/G
A: .002; G: .998
.005
59747654
Sequencing
AGTCTGATTGTGGCTATTTGC
TATACTGTTAGCCTCTGACCCAT
252


Breakpoint
rs7072568 A/G NK NK 59748801 Sequencing AGGTGGGCGGGATGTTAATGT TGACCGGGAGAAAAGGCTTAAGA 272
rs12241885 C/T NK NK 59756553 Enzyme digestion CATAAATTGCCCGATTGCCGACT AGGGATCTTGCAGCCGTCAGAA 307 Fnu4HI C: 12, 50, 61, 184; T: 12, 50, 245
rs1007915 A/G G: .009; A: .991 .018 59760590 Enzyme digestion TACACTTCCTTCCTCCTGCGTAG AGATGTGGGCACCAGGATATG 334 Mse I G: 81, 116, 137; A: 12, 81, 116, 125
a

NK = Not known.

b

Location from UCSC Genome Browser, May 2004.

HHS Vulnerability Disclosure