Table 5.
dbSNP Accession Numbers and Details for the Analyzed SNPs
|
Primers |
||||||||||
| Chromosome and dbSNP Accession Number | Alleles | Allele Frequencya | Heterozygositya | Locationb | Method | Forward | Reverse |
PCR Length (bp) |
Enzyme |
Restriction Fragment Lengths (bp) |
| 10p: | ||||||||||
| rs3898062 | A/G | NK | NK | 37143715 | Enzyme digestion | AGGAGAATGGCGTGAATC | GATATTATCATGGAGGCTTTAGG | 344 | MseI | A: 29, 42, 117, 156; G: 42, 146, 156 |
| rs2488748 | C/G | G: .951; C: .049 | .095 | 37145779 | Enzyme digestion | GTGGCAAGAAAGCTAGTAAGT | TCAAATAGCAGAGTCGCA | 320 | Fnu4HI | C: 81, 239; G: 58, 81, 181 |
| rs12257945 | A/G | NK | NK | 37147006 | Sequencing | TTGTATTAGAGGAACCCGAAGCA | GGAGCCAGTGTAACACGGTAGAT | 324 | … | … |
| rs12572077 | A/C | A: .472; C: .528 | .498/.166 | 37147261/37147272 | Sequencing | CATCTTTTCCCCACCATAGTGTT | CTCAGCCACAGATTCAAGTTCC | 272 | … | … |
| rs2695081 | G/C | G: .092; C: .908 | ||||||||
| rs4934835 | G/C | NK | NK | 37147530 | Sequencing | AGGCTGCTCAAATAAACACGTGAA | GTGGTGGTGTACCCGTGGTC | 224 | … | … |
| rs11010897 | A/G |
NK |
NK |
37147709 |
Enzyme digestion |
GTACACCACCACAGCTAATG |
GTTGGCTATAATACGGAGTTCTA |
354 |
AluI |
A: 14, 108, 232; G: 14, 340 |
| Breakpoint |
||||||||||
| rs2463226 | A/T | NK | NK | 37148241 | Sequencing | CAAGGATCTTCTTTTACCAGTTA | AATGAAACTAATTTTATCATAGGCT | 155 | … | … |
| rs10827731 | C/T | T: .127; C: .873 | .222 | 37148704 | Sequencing | GCACCAATATAAAAATGACTCAAA | CTCAAGAGCAGCCAGAGTG | 170 | … | … |
| rs11817755 | G/T | NK | NK | 37148915 | Enzyme digestion | GAGGTGTGGAAGGAGAGGCGCAGGT | AGCTGAGGCCCGGCAAGAATTTGAGT | 239 | AluI | G: 2, 20, 74, 143; T: 2, 20, 60, 74, 83 |
| rs3867222 | C/T | C: .444; A: .556 | .494 | 37151520 | Enzyme digestion | GTTCCATCACAGGTCATCTT | CAATAAAATGTTGGGCTATTAAA | 332 | Tsp45I | C: 332; T: 83, 249 |
| rs2490841 | G/T | G: .134; T: .866 | .232 | 37152375 | Enzyme digestion | TGGCTGTGTTTTCAGATTGG | GAGAGGGAAAGAGCAATGACA | 272 | AluI | G: 78, 194; T: 272 |
| rs16851 | C/T | C: .022; T: .978 | .042 | 59743596 | Enzyme digestion | TATCTACACATTCCATTATTCCC | CATAATATATGTCAGGCGTTTG | 195 | TaqI | C:44, 151; T:195 |
| rs11818916 | A/C | NK | NK | 59744939 | Enzyme digestion | TGGATGTTTGATGGAGTTGGTAGTTTTG | GTAGTGTCTGCTGGGTTCACCGAA | 199 | Tsp45I | A: 61, 138; C: 199 |
| rs2486489 | G/T | G: .023; T: .977 | .046 | 59746059 | Sequencing | TTCCCCCACAAAACATCTCAACTG | TGGTTTCCAGCTAGTAGATTTGAATCCA | 221 | … | … |
| rs12248484 | A/G |
A: .002; G: .998 |
.005 |
59747654 |
Sequencing |
AGTCTGATTGTGGCTATTTGC |
TATACTGTTAGCCTCTGACCCAT |
252 |
… |
… |
| Breakpoint |
||||||||||
| rs7072568 | A/G | NK | NK | 59748801 | Sequencing | AGGTGGGCGGGATGTTAATGT | TGACCGGGAGAAAAGGCTTAAGA | 272 | … | … |
| rs12241885 | C/T | NK | NK | 59756553 | Enzyme digestion | CATAAATTGCCCGATTGCCGACT | AGGGATCTTGCAGCCGTCAGAA | 307 | Fnu4HI | C: 12, 50, 61, 184; T: 12, 50, 245 |
| rs1007915 | A/G | G: .009; A: .991 | .018 | 59760590 | Enzyme digestion | TACACTTCCTTCCTCCTGCGTAG | AGATGTGGGCACCAGGATATG | 334 | Mse I | G: 81, 116, 137; A: 12, 81, 116, 125 |
a
NK = Not known.
b
Location from UCSC Genome Browser, May 2004.