Table 1.
Signal to noise ratio (SNR) and signal to background ratio (SBR) detectability metrics microarray datasets. The first 20 microarray datasets use Stratagene Universal Reference RNA™ as a reference. The bottom 2 microarray datasets are datasets generated by our laboratory
| SNR > 3 | SBR > 2 | |||||||
| Experiment | Platform | Cy3 | Cy5 | Both | Cy3 | Cy5 | Both | Pubmed ID |
| GSE332 | GPL260 | 89% | 88% | 87% | 68% | 67% | 64% | |
| GSE333 | GPL260 | 89% | 80% | 80% | 66% | 49% | 47% | |
| GSE432 | GPL285 | 55% | 24% | 24% | 42% | 25% | 24% | |
| GSE1041 | GPL981 | 65% | 48% | 47% | 75% | 68% | 66% | |
| GSE1138 | GPL977 | 58% | 48% | 42% | 82% | 72% | 69% | 15156144 |
| GSE1319 | GPL1197 | 91% | 83% | 83% | 86% | 88% | 84% | 15328174 |
| GSE1486 | GPL1225 | 33% | 27% | 19% | 18% | 37% | 16% | |
| GSE1533 | GPL1299 | 20% | 19% | 14% | 25% | 34% | 21% | |
| GSE1645 | GPL1384 | 54% | 51% | 46% | 63% | 63% | 58% | 15718295 |
| GSE1705 | GPL1390 | 96% | 86% | 85% | 91% | 87% | 87% | |
| GSE1705 | GPL885 | 87% | 59% | 58% | 80% | 71% | 70% | |
| GSE1705 | GPL887 | 71% | 61% | 59% | 67% | 79% | 65% | |
| GSE1706 | GPL1390 | 88% | 75% | 74% | 81% | 83% | 77% | 15679094 |
| GSE1706 | GPL885 | 88% | 78% | 76% | 75% | 79% | 72% | 15679094 |
| GSE1706 | GPL887 | 76% | 54% | 53% | 71% | 56% | 56% | 15679094 |
| GSE1818 | GPL885 | 100% | 100% | 100% | 100% | 97% | 97% | 15994931 |
| GSE2134 | GPL1786 | 86% | 89% | 83% | 89% | 89% | 87% | |
| GSE2900 | GPL2614 | 72% | 88% | 70% | 80% | 91% | 80% | 15838786 |
| GSE3023 | GPL2695 | 78% | 86% | 74% | 85% | 94% | 85% | 16168081 |
| GSE3023 | GPL2696 | 82% | 86% | 81% | 88% | 89% | 87% | 16168081 |
| GSE2718 | GPL2000 | 86% | 74% | 71% | 82% | 73% | 67% | 16189278 |
| vRNA | in-house | 97% | 95% | 93% | 97% | 90% | 87% | |