Table 4.
Computational time (in seconds) to get the statistics of all DNA words of length h in the HIV complete genome sequence (n = 9719) using either simple recurrences of finite Markov chain imbedding and in respect with an order m Markov model estimated on the genome.
Markov order word length | m = 0 | m = 1 | m = 2 | ||||||
h = 3 | h = 4 | h = 5 | h = 3 | h = 4 | h = 5 | h = 3 | h = 4 | h = 5 | |
SR | 3 | 4 | 5 | 61 | 59 | 62 | 104 | 102 | 106 |
FMCI | 39 | 45 | 52 | 39 | 44 | 52 | 96 | 102 | 113 |