Table 2.
Excerpt of CLASSIFI results for six gene clusters giving significant probabilities
| GO ID | f | n | prob | GO type | GO term | Cluster ID |
| GO:0005634 | 254 | 64 | 8.71E-06 | CC | nucleus | 1 |
| GO:0005635 | 13 | 9 | 1.66E-05 | CC | nuclear membrane | 1 |
| GO:0006412 | 94 | 30 | 2.75E-05 | BP | protein biosynthesis | 1 |
| GO:0009059 | 94 | 30 | 2.75E-05 | BP | macromolecule biosynthesis | 1 |
| GO:0003743 | 20 | 10 | 2.68E-04 | MF | translation initiation factor activity | 1 |
| GO:0016655 | 14 | 11 | 4.94E-08 | MF | oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor | 6 |
| GO:0008137 | 14 | 11 | 4.94E-08 | MF | NADH dehydrogenase (ubiquinone) activity | 6 |
| GO:0015081 | 14 | 11 | 4.94E-08 | MF | sodium ion transporter activity | 6 |
| GO:0016651 | 16 | 11 | 4.61E-07 | MF | oxidoreductase activity, acting on NADH or NADPH | 6 |
| GO:0046873 | 16 | 11 | 4.61E-07 | MF | metal ion transporter activity | 6 |
| GO:0005773 | 12 | 4 | 1.00E-07 | CC | vacuole | 7 |
| GO:0016787 | 163 | 6 | 2.52E-05 | MF | hydrolase activity | 7 |
| GO:0005624 | 15 | 3 | 2.84E-05 | CC | membrane fraction | 7 |
| GO:0000267 | 18 | 3 | 5.05E-05 | CC | cell fraction | 7 |
| GO:0015991 | 3 | 2 | 5.31E-05 | BP | ATP hydrolysis coupled proton transport | 7 |
| GO:0003779 | 15 | 9 | 6.30E-06 | MF | actin binding | 8 |
| GO:0008092 | 22 | 9 | 3.08E-04 | MF | cytoskeletal protein binding | 8 |
| GO:0003785 | 6 | 4 | 1.88E-03 | MF | actin monomer binding | 8 |
| GO:0006357 | 10 | 5 | 2.58E-03 | BP | regulation of transcription from Pol II promoter | 8 |
| GO:0006355 | 79 | 17 | 4.85E-03 | BP | regulation of transcription, DNA-dependent | 8 |
| GO:0005576 | 156 | 33 | 7.28E-09 | CC | extracellular | 14 |
| GO:0005578 | 5 | 4 | 1.33E-04 | CC | extracellular matrix | 14 |
| GO:0004871 | 50 | 11 | 7.39E-04 | MF | signal transducer activity | 14 |
| GO:0004888 | 7 | 4 | 8.29E-04 | MF | transmembrane receptor activity | 14 |
| GO:0007166 | 25 | 7 | 1.59E-03 | BP | cell surface receptor linked signal transduction | 14 |
| GO:0015672 | 10 | 7 | 1.38E-06 | BP | monovalent inorganic cation transport | 18 |
| GO:0006811 | 23 | 10 | 2.65E-06 | BP | ion transport | 18 |
| GO:0005215 | 122 | 24 | 9.10E-06 | MF | transporter activity | 18 |
| GO:0006812 | 18 | 8 | 2.33E-05 | BP | cation transport | 18 |
| GO:0006754 | 4 | 4 | 3.36E-05 | BP | ATP biosynthesis | 18 |
The five GO IDs giving the lowest probability are listed for each of six gene clusters giving significant probabilities in Table 1. GO ID = a unique Gene Ontology identifier that corresponds to a defined molecular function, biological process, or cellular component (GO name). f = number of probes with the associated GO ID in the data set, n = number of probes with the associated GO ID in the gene cluster. prob = the probability that the GO ID co-cluster pattern has occurred by chance.