Table 1.

Extracting processes and identification results of ENACE

				Located in CDS
ENACE processes	AS types	Meta-ENACE exons	Pass Rule 1	Pass Rule 2	Pass Rule 3	Located in UTR*	ENACE exons +
EH-m	Cassette-on	270	219	172	92	24	116
	Retained intron	38	-	12	5	3	8
EM-h	Cassette-on	315	260	208	98	22	120
	Retained intron	51	-	18	5	2	7
EH-r	Cassette-on	49	44	39	26	3	28
	Retained intron	7	-	3	1	1	2
ER-h	Cassette-on	328	244	194	85	2	87
	Retained intron	59	-	24	1	1	2
EM-r	Cassette-on	255	210	169	74	31	105
	Retained intron	202	-	65	14	2	16
ER-m	Cassette-on	2789	2017	1550	317	59	376
	Retained intron	679	-	220	40	17	57
Total		5042	2994	2674	758	167	925

.* Rules 2 and 3 only apply to prediction of coding exons.