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. Author manuscript; available in PMC: 2006 Jun 20.
Published in final edited form as: J Mol Biol. 2006 Jan 3;357(1):173–183. doi: 10.1016/j.jmb.2005.12.051

Figure 2.

Figure 2

Superimposed structures of complexes of CAP with DNA sites containing all possible base pairs at position 6 of the primary-kink site obtained in this study. CAP is presented in a ribbon representation. DNA is colored as follows: cyan, CAP-DNA; blue, CAP-[6A;17T]DNA; yellow, CAP-[6G;17C]DNA; red, CAP-[6C;17G]DNA. The figure was generated using PyMol (http://pymol.sourceforge.net/) and nuccyl (http://www.mssm.edu/students/jovinl02/research/nuccyl.html).