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. 2006 May;188(10):3682–3696. doi: 10.1128/JB.188.10.3682-3696.2006

TABLE 6.

Proteins with functional annotations unique to AY-WB and OY-M within the class Mollicutes

AY-WB ORF ID Gene ID Annotation OY-M
Other organisms
GenBank accession no.a E valueb GenBank accession no. E valueb
Transcription
    AYWB_654 rpoZ EC 2.7.7.6 39939222 9e−19 58337597 2e−07
Translation
    AYWB_504 rpmD LSU ribosomal protein L30P 39938704 5e−28 50590420 3e−09
Membrane transport
    AYWB_052 citS Malate-sodium symporter 39939206 e−166 42528200 5e−36
    AYWB_435 citS Malate-sodium symporter 39938772 e−174 15672883 2e−30
    AYWB_125 artM ABC-type permease protein ArtM 39939074 0 48866203 2e−35
    AYWB_263 artI ABC type solute-binding protein ArtI 39938975 6e−60 58336459 1e−21
    AYWB_265 artQ ABC-type permease protein ArtQ 39938973 9e−79 24376619 2e−17
    AYWB_315 glnP ABC-type permease protein GlnP 39938942 0 15022937 2e−30
    AYWB_587 ABC-type Met ATP-binding protein 39938620 e−101 29377647 1e−13
    AYWB_588 nlpA ABC-type Met binding protein 39938619 e−136 25010851 3e−05
    AYWB_621 mntB ABC-type membrane protein 39938580 e−177 42526732 2e−53
    AYWB_622 mntB ABC-type membrane protein 39938580 e−162 53685687 1e−47
    AYWB_624 znuA ABC-type Mn/Zn-binding protein 39938578 e−168 1335912 1e−41
    AYWB_667 malEa ABC-type maltose-binding protein 39939235 0 52858068 2e−18
    AYWB_439 norM Na+-driven multidrug efflux pump 39938768 0 NA
    AYWB_441 norM Na+-driven multidrug efflux pump 39938766 0 NA
    AYWB_467 secEa SecE 40786355 1e−37 NA
Metabolic enzymes
    AYWB_051 sfcA EC 1.1.1.38 39939207 0 28202548 e−129
    AYWB_120 pssA EC 2.7.8.8 39939099 8e−92 15023686 2e−16
    AYWB_121 psd EC 4.1.1.65 39939098 e−178 15023687 9e−50
    AYWB_326 sodA EC 1.15.1.1 39938928 e−107 15672390 1e−60
    AYWB_415 pmt EC 2.1.1- 39938792 0 45682627 4e−06
    AYWB_470 pnpa EC 2.7.7.8 39938737 0 48824146 e−178
    AYWB_532 EC 3.4.17.19 39938673 0 52698549 e−146
    AYWB_598 qnsa EC 6.3.5.1 39938607 0 16804107 e−158
    AYWB_607 pcnB EC 2.7.7.19 39938586 2e−14 NA NA
Other
    AYWB_017 ibpA Hsp20 39938514 9e−64 4884483 7e−14
    AYWB_302 mutT Phosphohydrolase 39938962 8e−92 15673603 2e−24
    AYWB_331 tldD TldD 39938933 0 15024804 e−107
    AYWB_332 pmbA PmbA 39938933 0 18143998 2e−54
    AYWB_561 hlyCa Hemolysin III 39938644 e−110 18145579 5e−26
    AYWB_599 Immunodominant protein precursor 39938608 2e−10 NA NA
    AYWB_630 Rhodanese-related sulfurtransferase 39938571 e−180 23098027 e−109
    AYWB_646 pduL PduL 39939215 e−102 49235943 5e−44
a

Genes with identical annotations but no sequence similarities in SEM branch mollicute.

b

The E values were obtained by searching against the GenBank nonredundant database with 2,506,223 sequences consisting of 849,940,114 letters on a local Linux workstation. Results from the GenBank search were verified using the mollicute database MolliGen (http://cbi.labri.fr/outils/molligen/) (11). NA, not available.