Skip to main content
Nucleic Acids Research logoLink to Nucleic Acids Research
. 1999 Aug 1;27(15):e8. doi: 10.1093/nar/27.15.e8

Identification of differentially expressed 5'-end mRNA variants by an improved RACE technique (PEETA).

G Flouriot 1, H Brand 1, F Gannon 1
PMCID: PMC148519  PMID: 10454627

Abstract

A rapid and efficient procedure is described for mapping and cloning the 5'-ends of mRNAs, including those generated from a unique gene by alternative splicing and promoter usage. This method involves reverse transcription of the targeted mRNAs from a long, highly labeled specific primer, resolution of the extension products on a DNA sequencing gel, elution and poly(dC) tailing of the single-stranded cDNAs of interest, amplification of these cDNAs by PCR using an oligo(dG) adapter-primer and a gene-specific primer and finally DNA sequencing of the subcloned PCR fragments. The overall method is called PEETA (primer extension, electrophoresis, elution, tailing and amplification).

Full Text

The Full Text of this article is available as a PDF (184.7 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Flouriot G., Griffin C., Kenealy M., Sonntag-Buck V., Gannon F. Differentially expressed messenger RNA isoforms of the human estrogen receptor-alpha gene are generated by alternative splicing and promoter usage. Mol Endocrinol. 1998 Dec;12(12):1939–1954. doi: 10.1210/mend.12.12.0209. [DOI] [PubMed] [Google Scholar]
  2. Flouriot G., Pope C., Kenealy M. R., Gannon F. Improved efficiency for primer extension by using a long, highly-labeled primer generated from immobilized single-stranded DNA templates. Nucleic Acids Res. 1997 Apr 15;25(8):1658–1659. doi: 10.1093/nar/25.8.1658. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Frohman M. A., Dush M. K., Martin G. R. Rapid production of full-length cDNAs from rare transcripts: amplification using a single gene-specific oligonucleotide primer. Proc Natl Acad Sci U S A. 1988 Dec;85(23):8998–9002. doi: 10.1073/pnas.85.23.8998. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Liu X., Gorovsky M. A. Mapping the 5' and 3' ends of Tetrahymena thermophila mRNAs using RNA ligase mediated amplification of cDNA ends (RLM-RACE). Nucleic Acids Res. 1993 Oct 25;21(21):4954–4960. doi: 10.1093/nar/21.21.4954. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Loh E. Y., Elliott J. F., Cwirla S., Lanier L. L., Davis M. M. Polymerase chain reaction with single-sided specificity: analysis of T cell receptor delta chain. Science. 1989 Jan 13;243(4888):217–220. doi: 10.1126/science.2463672. [DOI] [PubMed] [Google Scholar]
  6. Ohara O., Dorit R. L., Gilbert W. One-sided polymerase chain reaction: the amplification of cDNA. Proc Natl Acad Sci U S A. 1989 Aug;86(15):5673–5677. doi: 10.1073/pnas.86.15.5673. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Towner P., Gärtner W. cDNA cloning of 5' terminal regions. Nucleic Acids Res. 1992 Sep 11;20(17):4669–4670. doi: 10.1093/nar/20.17.4669. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Troutt A. B., McHeyzer-Williams M. G., Pulendran B., Nossal G. J. Ligation-anchored PCR: a simple amplification technique with single-sided specificity. Proc Natl Acad Sci U S A. 1992 Oct 15;89(20):9823–9825. doi: 10.1073/pnas.89.20.9823. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Nucleic Acids Research are provided here courtesy of Oxford University Press

RESOURCES