TABLE 7.
Sequence alignment of pmpH in variable region around bp 500
| Serovar | Sequence (from bp 476)a |
|---|---|
| A | CGCCTGCTCTAGATCCATCCCCTACCGCTTCAAGCTCTTCATCTCCCACAGTCAGTGATGCTCGCCAGGGATCTATTTTTTCTATAGAGACCAGTTTAGA |
| B | .........C.......................................................................................... |
| Ba | .........C.......................................................................................... |
| C | .........C.......................................................................................... |
| D | .T..A..A.C..CA...G.T...G.T.............T......A.....T...........GA.A..G............G.......T.....G.. |
| E | .T..A..A.C..CA...G.T...G.T.............T......A.....T...........GA.A..G............G.......T.....G.. |
| F | .T..A..A.C..CA...G.T...G.T.............T......A.....T...........GA.A..G............G.......T.....G.. |
| G | .T..A..A.C..CA...G.T...G.T.............T......A.....T...........GA.A..G............G.......T.....G.. |
| H | .T..A..A.C..CA...G.T...G.T.............T......A.....T...........GA.A..G............G.......T.....G.. |
| I | .T..A..A.C..C------T...G.T.............T......A.....T...........GA.A..G............G.......T.....G.. |
| J | .T..A..A.C..C------T...G.T.............T......A.....T...........GA.A..G............G.......T.....G.. |
| K | .T..A..A.C..C------T...G.T.............T......A.....T...........GA.A..G............G.......T.....G.. |
| L1 | .......------------------------------------...A.....T...........GA.A..G............G.......T.....G.. |
| L2 | .......------------------------------------...A.....T...........GA.A..G............G.......T.....G.. |
| L3 | .......------------------------------------...A.....T...........GA.A..G............G.......T.....G.. |
a
pmpH sequences for all serovars were compared to that of serovar A on the top line. ., identity with serovar A; -, deletion compared to serovar A.