Table 4.
The most abundant annotated SAGE-tags of zebrafish fully-grown follicles and the presence of homologous UniGene clusters in vertebrate ovary/unfertilized egg cDNA libraries
| Tag N° | Cluster* | Description | Trout | Salmon | Fugu | Xenopus | Swine | Mouse | Human |
| A. Occurrences > 0.15% in ZEBRAOV and cDNA libraries ID.9767 and ID.15519 | |||||||||
| 2 | Dr.1109 | Beta-actin2 | Y | N | Y* | Y | Y | Y | Y* |
| 12 | Dr.25213 | Beta-actin1 | |||||||
| 9 | Dr.5628 | Similar to contains element MSR1 repetitive element/ZP1-related | N | N | N | Y | N | N | Y |
| 15 | Dr.19916 | Egg envelope protein ZP2 variant B [zp2.3] | N | N | N | Y | N | N | Y |
| 15 | Dr.23439 | Zp2.4 protein | Y | N | N | n.i. | n.i. | N | N |
| 19 | Dr.26977 | Zona pellucida glycoprotein 3b | Y* | Y* | N | Y | N | N | Y |
| 20 | Dr.30322 | Zona pellucida glycoprotein 3 | |||||||
| 43 | Dr.5605 | Tubulin beta 2 | N | Y | n.i. | Y | Y* | Y* | Y* |
| B. Occurrences > 0.15% in ZEBRAOV and cDNA library ID.9767 | |||||||||
| 1 | Dr.12439 | Transcribed locus similar to rhamnose-binding lectin/Latrophilin-2 | Y* | Y* | n.i. | Y | N | N | Y |
| 3 | Dr.46793 | Transcribed locus similar to H2B histone family | n.i. | n.i. | n.i. | N | Y | N | Y |
| 7 | Dr.26975 | Claudin d | N | n.i. | n.i. | Y* | Y | N | Y |
| 8 | Dr.47296 | Zgc:66160 | N | n.i. | n.i. | Y | N | Y | N |
| 14 | Dr.47212 | Transcribed locus, moderately similar to thymosin beta 10 | N | n.i. | n.i. | Y | Y | N | Y |
| 41 | Dr.5890 | Zgc:112226 similar to cathepsin S | N | N | n.i. | N | N | N | N |
| 59 | Dr.12480 | Clone IMAGE:5604190, weakly similar to Cd27 binding protein | N | n.i. | n.i. | Y | N | N | Y |
| C. Occurrences > 0.15% in ZEBRAOV and cDNA library ID.15519 | |||||||||
| 26 | Dr.30264 | Ribosomal protein L3 | N | N | n.i. | N | N | N | Y* |
| 28 | Dr.1012 | Retinol dehydrogenase 10 | N | n.i. | n.i. | Y | n.i. | N | Y |
| 38 | Dr.5555 | Cyclin A1 | N | n.i. | n.i. | Y* | N | N | Y |
| D. Occurrences > 0.15% in ZEBRAOV | |||||||||
| 5 | Dr.47289 | Metallothionein 2 | n.i. | Y | N | N | N | N | N |
| 10 | Dr.31066 | Heat shock protein 90-beta | N | Y | n.i. | Y | Y | Y* | Y* |
| 11 | Dr.729 | Lactate dehydrogenase B4 | N | N | n.i. | Y | Y | Y* | Y* |
| 13 | Dr.1043 | ATP synthase, H+ transporting, mit.F0 complex, subunit c (subunit 9) | Y* | Y* | Y* | Y | Y | N | Y |
| 16 | Dr.989 | Zgc:56419 similar to stress-associated endoplasmic reticulum protein 1 | N | n.i. | n.i. | Y | Y | N | Y |
| 21 | Dr.13590 | Transcribed locus, moderately similar to zygote arrest 1 | Y | n.i. | N | Y | N | Y | N |
| 24 | Dr.29860 | Transcribed locus | N | n.i. | n.i. | n.i. | n.i. | n.i. | n.i. |
| 31 | Dr.1428 | Ribosomal protein S15a | N | N | n.i. | N | n.i. | Y | Y |
| 32 | Dr.7383 | Zgc:73301 similar to cytochrome oxidase III | n.i. | n.i. | n.i. | n.i. | n.i. | n.i. | n.i. |
| 34 | Dr.29755 | Wu:fe38a04 similar to RL31_HUMAN 60S ribosomal protein L31 | N | n.i. | n.i. | n.i. | n.i. | N | n.i. |
| 35 | Dr.23788 | Glutathione S-transferase pi | N | n.i. | n.i. | N | N | n.i. | Y |
| 36 | Dr.14015 | Im:7140333 weakly similar to latrophilin; lectomedin-1 | n.i. | n.i. | n.i. | Y | n.i. | N | Y |
| 40 | Dr.24903 | Zgc:66168 similar to ubiquitin; 40S ribosomal protein S27a | Y | Y | Y* | Y | Y* | N | Y |
| 42 | Dr.26808 | Ribosomal protein L10a | N | N | N | N | Y | Y | Y* |
| 44 | Dr.1335 | Ribosomal protein L36 | N | N | N | Y | Y | N | Y |
| 46 | Dr.6496 | Ferritin, heavy polypeptide 1 | Y | Y * | Y | Y | Y * | Y | Y * |
| 47 | Dr.1209 | Signal sequence receptor, beta | N | n.i. | n.i. | Y | n.i. | N | Y |
| 51 | Dr.11308 | Ribosomal protein, large, P0 | N | n.i. | N | Y | n.i. | n.i. | Y* |
| 52 | Dr.4947 | Cold inducible RNA binding protein | N | Y | n.i. | Y | Y | Y | Y |
| 53 | Dr.1334 | Ribosomal protein S25 | Y | n.i. | Y | Y | n.i. | Y | Y |
*UniGeneBuild#87. The homologous UniGene clusters in other vertebrate species were found with UniGene tool or Blast search. Y, homologous UniGene cluster identified in the library. Y*, homologous UniGene cluster identified in the library with an occurrence >0.15%. N, the homologous UniGene cluster was not detected in the library. n.i., an homologous UniGene cluster was not recovered in UniGene. The presence of homologous clusters in at least four tetrapods or at least five compared vertebrate species are underlined. The vertebrates dbEST cDNA libraries accession numbers used for comparison were: ID.15587 for rainbow trout (Oncorhynchus mykiss); ID.15459 for Atlantic salmon (Salmo salar); ID.11967 for Fugu (Takifugu rubripes); ID.9909 for Xenopus tropicalis; ID.15096 for swine (Sus scrofa), ID.10029, ID.14142, and ID.1389 for mouse (Mus musculus); ID.4908, ID.10552, and ID.5611 for human (Homo sapiens).