Table 3.
Locus name | aliasa | % matches | % G+C content | Primer sequence | Estimated size range (bp) | Unit numbera,b | No. of allelesa | HGDI | |
Panel 1 markers (minisatellites, repeat unit above 9 base-pairs) | Cbu0033_ms01_16bp_4U_198bp | 77 | 35 | L: GGCTCATTCAATTTTAGCTTCG R: AACGTGGGGAAGTTTGTTATTT |
182–198 | 3–4 | 2 | 0,47 | |
Cbu0448_ms03_12bp_7U_229bp | 81 | 18 | L: TTGTCGATAAATCGGGAAACTT R: CACTGGGAAAAGGAGAAAAAGA |
217–229 | 6–7 | 2 | 0,46 | ||
Cbu0988_ms07_126bp_8U_1112bp | 69 | 6 | L: CTCTTAGCCATCGCTTACCACT R: AACGAAAATTGGTTTGCATTTT |
734–1112 | 5–8 | 4 | 0,42 | ||
Cbu1316_ms12_126bp_8U_1074bp | 74 | 12 | L: GAAAATTGGTTTGCGCTCTG R: CCTTCTCCCAAGAAGTTTAGCC |
570–1200 | 4, 7–9 | 4 | 0,67 | ||
Cbu1941_ms20_18bp_15U_402bp | 76 | 6 | L: CTGAAACCAGTCTTCCCTCAAC R: CTTTATCTTGGCCTCGCCCTTC |
384–528 | 14–15, 18–19, 22 | 6 | 0,7 | ||
Cbu1963_ms21_12bp_6U_210bp | 75 | 42 | L: AGCATCTGCCTTCTCAAGTTTC R: TGGGAGGTAGAAGAAAAGATGG |
210–222 | 5–6 | 2 | 0,37 | ||
Cbu1980_ms22_11bp_6U_246bp | 66 | 9 | L: GGGGTTTGAACATAGCAATACC R: CAATATCTCTTTCTCCCGCATT |
246–257 | 6–7 | 2 | 0,28 | ||
Cbu0831_ms26_9bp_4U_127bp | Cox3 | 94 | 99 | L: AGAATCAAACCTGCAAAACCTT R: TTGATTATTTTGACTTCGCTGGT |
109–244 | 2, 4–5, 11, 13–14, 17 (2,4,13,14,16,18)c | 6 | 0,73 | |
Cbu1351_ms30_18bp_6U_215bp | 63 | 81 | L: ATTTCCTCGACATCAACGTCTT R: AGTCGATTTGGAAACGGATAAA |
197–215 | 5–6 | 2 | 0,42 | ||
Cbu1941_ms36_9bp_4U_447bp | 80 | 59 | L: GAAACCAGTCTTCCCTCAACAG R: ATAACCGTCATCGTCACCTTCT |
474–601 | 7,15,17,21 | 4 | 0,55 | ||
Panel 2 markers (microsatellites, 6 or 7 bp repeat units) | Cbu0197_ms23_7bp_8U_157bp | Cox6 | 90 | 51 | L: GGACAAAAATCAATAGCCCGTA R:GAAAACAGAGTTGTGTGGCTTC |
122–157 | 3,5,8 (3,5–6,8)c | 4 | 0,67 |
Cbu0259_ms24_7bp_27U_344bp | Cox4d | 94 | 46 | L: ATGAAGAAAGGATGGAGGGACT R: GATAGCCTGGACAGAGGACAGT |
204–344 | 7–13,27 (6,9,12,27)c | 8 | 0,79 | |
Cbu0838_ms27_6bp_4U_276bp | Cox2 | 90 | 99 | L: TTTTGAGTAAAGGCAACCCAAT R: CAAACGTCGCACTAACTCTACG |
264–282 | 2–5 (2–4)c | 4 | 0,73 | |
Cbu0839_ms28_6bp_6U_276bp | Cox5 | 94 | 83 | L: TAGCAAAGAAATGTGAGGATCG R: ATTGAGCGAGAGAATCCGAATA |
258–288 | 3–8 (3–7)c | 6 | 0,74 | |
Cbu1418_ms31_7bp_5U_182bp | Cox7 | 89 | 41 | L: GGGCATCTAATCGAGATAATGG R: TTTGAGAAAATTTTGGGTGCTT |
161–182 | 2–5 (idem)c | 4 | 0,51 | |
Cbu1435_ms33_7bp_9U_262bp | 87 | 50 | L: TAGGCAGAGGACAGAGGACAGT R: ATGGATTTAGCCAGCGATAAAA |
227–1600 | 4,6–9 | 6 | 0,75 | ||
Cbu1471_ms34_6bp_5U_210bp | Cox1 | 100 | 99 | L: TGACTATCAGCGACTCGAAGAA R: TCGTGCGTTAGTGTGCTTATCT |
192–252 | 2–5,7–12 (2,3,5,10)c | 10 | 0,86 |
a previously described loci (and corresponding data) is indicated; b an uninterrupted allele range is indicated by a '-'; c allele size range reported by [48]; d Cox4 was initially reported as a 21 bp tandem repeat [48], however we observe a 7 bp repeat unit based variation, in agreement with [46]