TABLE 2.

Primers and probes used for the detection of porcine NoVs and SaVs

Porcine NoV or SaV/genogroup or genotype	Primer name (sense) and sequence (5′→3′)	Product size (bp)	Probe name and sequence (5′→3′)
NoV/GII-11, -18, -19	PNV7 (+): AGG TGG TGG CCG AGG AYC TCC T	211	PoNoroP1A: AGC CAG TGG GCG AAG GAG TTC CAC TGT GAT GTG CA
PNV8 (−): TCA CCA TAG AAG GAR AAG CA
			PoNoroP1B: AGC CAA TGC GCT ATG GAG TTC CAC TGT GAT GTG CA
			PoNoroP1C: AGC CAA TGG GCA AAG GAA TTC CAT TGT GAT GTG CA
SaV/GIII	PEC66 (+): GAC TAC AGC AAG TGG GAT TCC	330	PoSapoP1A: ATR ACA CTG GTG AAG GGC ATG CCA GAG GGG AG
PEC65 (−): ATA CAC ACA ATC ATC CCC GTA
			PoSapoP1B: ATC ACA CTG GTG AAG GGC ATG CCT GAT GGT AA
SaV/GVI?/JJ681	PEC68 (+): CCG CTA TAA ATT TAT TGG GTG	225	PECP1: AAC TGA GTT GAT CAC ACT GGT GCC TGG CAT TCC AGA
PEC67 (−): ACG GGA CCC CAT ATT TTT GG
SaV/G?/QW19	PSV6 (+): CGG TCA TTT TGT GTG GAC TG	219	PoSapoP1C: ATG ACG CTG GTG AAT GGC ATG CCA GAG GGA AG
PSV7 (−): ATT GCC CGT ATA AGG CAC A
SaV/G?/LL26	PSV11 (+): CAC CCA GAG GTG ATT TCA ACA GCA	231	PECP2: GTA AGC CCT TCT GTG TGG GCA ATG AGA TGT CAA ACA
	PSV14 (−): TTC TGC GTA ACA CTG GAG CAC ACA