TABLE 1.
Characteristics of Pseudomonas strains
| Straina | Origin | Country | Strain genospeciesb (pathotype) | Yersiniabactin analysisc
|
||||
|---|---|---|---|---|---|---|---|---|
| HPLC result and MS- measured iond | PCR test result for the following gene and primers:
|
Dot blot resulte | ||||||
| fyuA; FyuA f′, FyuA r | irp1; irp1up, irp1lp | irp1; PSYE2, PSYE2R | ||||||
| P. syringae pv. aceris LMG 2106T | Unknown | Unknown | 1 | − | NT | NT | − | − |
| P. syringae pv. aptata LMG 5059T | Sugar beet | United States | 1 | − | NT | NT | − | − |
| P. syringae pv. atrofaciens LMG 5095T | Wheat | New Zealand | 1 | − | NT | NT | − | − |
| P. syringae pv. dysoxyli LMG 5062T | Dysoxylum spectabile | New Zealand | 1 | − | NT | NT | − | − |
| P. syringae pv. japonica LMG 5068T | Barley | Japan | 1 | − | NT | NT | − | − |
| P. syringae pv. lapsa LMG 2206T | Zea sp. | Unknown | 1 | − | NT | NT | − | − |
| P. syringae pv. panici LMG 2367T | Unknown | Unknown | 1 | − | NT | NT | − | − |
| P. syringae pv. papulans LMG 5076T | Apple | Canada | 1 | − | NT | NT | − | − |
| P. syringae pv. pisi LMG 5079T | Pea | New Zealand | 1 | − | NT | NT | − | − |
| P. syringae pv. syringae LMG 1247T | Lilac | England | 1 | − | NT | NT | − | − |
| P. syringae pv. ciccaronei LMG 5541T | Ceratonia siliqua | Italy | 2 | − | NT | NT | − | − |
| P. syringae pv. eriobotryae LMG 2184T | Eriobotrya japonica | United States | 2 | − | NT | NT | − | − |
| P. syringae pv. glycinea LMG 5515 | Soybean | Canada | ND (2) | − | NT | NT | − | + |
| P. syringae pv. mellea LMG 5072T | Tobacco | Japan | 2 | − | NT | NT | − | − |
| P. syringae pv. mori LMG 5074T | White mulberry | Hungary | 2 | − | NT | NT | − | − |
| P. syringae pv. myricae LMG 5668T | Myrica rubra | Japan | 2 | − | NT | NT | − | − |
| P. syringae pv. phaseolicola LMG 2245T | Bean | Canada | 2 | − | − | − | − | + |
| P. syringae pv. savastanoi LMG 2209T | Common olive | Yugoslavia | 2 | − | NT | NT | − | − |
| P. syringae pv. sesami LMG 2289T | Sesame | Yugoslavia | 2 | − | NT | NT | −- | − |
| P. syringae pv. tabaci LMG 5393T | Tobacco | Hungary | 2 | − | NT | NT | − | − |
| P. syringae pv. ulmi LMG 2349T | Elm | Yugoslavia | 2 | − | NT | NT | − | − |
| P. syringae pv. antirrhini LMG 5057T | Snapdragon | England | 3 | − | − | − | + | NT |
| P. syringae pv. apii LMG 2132T | Celery | United States | 3 | +, 535 | − | − | + | NT |
| P. syringae pv. berberidis LMG 2147 | Barberry | New Zealand | ND (3) | +, 535 | − | − | + | NT |
| P. syringae pv. delphinii LMG 5381T | Larkspur | New Zealand | 3 | +, 535 | − | − | + | + |
| P. syringae pv. lachrymans LMG 5070T | Cucumber | United States | 3 | +, 535 | − | − | + | + |
| P. syringae pv. maculicola LMG 5295 | Radish | United States | ND (3) | − | NT | NT | − | − |
| P. syringae pv. passiflorae LMG 5185T | Passiflora edulis | New Zealand | 3 | − | − | − | + | NT |
| P. syringae pv. persicae LMG 5184T | Peach | France | 3 | +, 535 | − | − | + | NT |
| P. syringae pv. ribicola LMG 2276T | Currant | Unknown | 3 | − | NT | NT | − | − |
| P. syringae pv. tomato strains | ||||||||
| LMG 5093T | Tomato | England | 3 | +, 535 | − | − | + | + |
| LMG 5155 | Tomato | United States | ND | +, 535 | − | − | + | NT |
| LMG 5507 | Tomato | Canada | ND | +, 535 | − | − | + | NT |
| LMG 5508 | Tomato | Switzerland | ND | + | − | − | + | NT |
| LMG 5509 | Tomato | New Zealand | ND | + | − | − | + | NT |
| P. syringae pv. viburni LMG 2351T | Arrowwood | United States | 3 | − | − | − | + | NT |
| P. syringae pv. coronafaciens strains | ||||||||
| LMG 5060T | Oat | England | 4 | − | NT | NT | − | NT |
| LMG 2330 | Unknown | Unknown | ND | − | NT | NT | − | − |
| P. syringae pv. garcae LMG 5064T | Coffee | Brazil | 4 | − | NT | NT | − | − |
| P. syringae pv. oryzae LMG 10912T | Rice | Japan | 4 | − | NT | NT | − | − |
| P. syringae pv. primulae LMG 2252T | Primrose | United States | 6 | − | NT | NT | − | − |
| P. syringae pv. helianthi LMG 5067T | Mirasol | Mexico | 7 | +, 535 | − | − | + | + |
| P. syringae pv. tagetis LMG 5090T | Marigold | Zimbabwe | 7 | +, 535 | − | − | + | + |
| P. syringae pv. theae LMG 5092T | Tea | Japan | 8 | +, 535 | − | − | + | + |
| P. syringae pv. morsprunorum race 1 LMG 2222 | Sweet cherry | England | ND (2, 3) | − | NT | NT | − | − |
| P. syringae pv. morsprunorum race 2 strains | ND | |||||||
| CFBP 3798 | Prunus sp. | England | − | − | − | + | NT | |
| CFBP 3799 | Sour cherry | England | + | − | − | + | NT | |
| CFBP 3800 | Sour cherry | England | + | − | − | + | NT | |
| Pm2C69 | Sour cherry | Belgium | + | − | − | + | NT | |
| Pm2C76 | Sour cherry | Belgium | − | − | − | + | NT | |
| Pm2C86 | Sour cherry | Belgium | − | − | − | + | NT | |
| Pm2C92 | Sour cherry | Belgium | − | − | − | + | NT | |
| P. viridiflava LMG 2352T | Bean | Switzerland | 6 | − | NT | NT | − | − |
| P. meliae LMG 2220T | Melia azedarach | Japan | 2 | − | NT | NT | − | − |
| P. ficuserectae LMG 5694T | Ficuserecta | Japan | 2 | − | NT | NT | − | − |
| P. cichorii LMG 2162T | Endive | Germany | − | − | − | − | NT | |
| P. asplenii LMG 2137 | Fern | Unknown | − | NT | NT | − | NT | |
| P. fuscovaginae LMG 2158T | Rice | Japan | − | NT | NT | − | NT | |
| P. agarici LMG 2112T | Agaricus bisporus | New Zealand | − | NT | NT | − | NT | |
| P. marginalis LMG 14572 | Dahlia | Unknown | − | NT | NT | − | NT | |
| P. marginalis pv. marginalis LMG 5177 | Bean | Unknown | − | NT | NT | − | NT | |
| P. fluorescens LMG 1794T | Water | England | − | − | − | − | NT | |
| P. chlororaphis LMG 5004T | Contaminated plate | Unknown | − | NT | NT | − | NT | |
| P. putida LMG 2257T | Soil | United States | − | − | NT | − | NT | |
a
LMG, Laboratorium voor Microbiologie van Gent; CFBP, Collection Française de Bactéries Phytopathogènes; T, type or pathotype.
b
Data from reference 30 obtained by DNA-DNA hybridization; ND, not determined; the number in parentheses is the genomic species of the pathotype strain when it was not used in this study.
c
Data from this study; NT, not tested.
d
+ and −, results of the HPLC analyses; the number is the nominal ion (m/z) measured in ESI-MS positive-ion analyses after Fe-YBT purification, when analyzed.
e
Dot blot results using the most stringent washing conditions.