TABLE 2.
N-terminal amino acid sequence of protein spots from 2-DE of F. tularensis culture filtrate proteins
Spota | N-terminal sequence | Best homologyb | Protein name or abbreviation | Calculated mass (kDa)c | Calculated pIc |
---|---|---|---|---|---|
1 | EDTTTKNDNLSPQSVDLS | Catalase-peroxidase | KatG | 80 | 5.4 |
2 | GKIIGIDLGTTNS | 70-kDa chaperone | DnaK | 69 | 4.8 |
3 | AAKQVLFSDEAR | 60-kDa chaperone | GroEL | 57 | 4.9 |
4 | MNLHEYQAKDLL | Succinyl-CoA synthetase, β subunit | SucC | 42 | 5.2 |
5 | MRVVINGFG | Glyceraldehyde 3-phosphate dehydrogenase | GAPDH | 35 | 5.7 |
6 | SKTAVVFPGQGS | (Acyl carrier protein) S-melanoyltransferase | FabD | 33 | 5.0 |
7 | SVLVDKNT | Succinyl-CoA synthetase, α subunit | SucC | 30 | 6.4 |
8 | SLPTPFI | Purine-nucleoside phosphorylase | DeoD | 27 | 7.8 |
9 | MKFELPKLPYAV | Superoxide dismutase | SodB | 22 | 5.6 |
10 | TKKVPNVTFKTR | Peroxiredoxin | Ahp1 | 20 | 5.1 |
11 | MELQLEN-QEIId | Bacterioferritin | Bfr | 17 | 5.6 |
12 | MNIRPLQ | 10-kDa chaperone | GroES | 10 | 5.4 |
The spot numbers correspond to those indicated in Fig. 4.
The protein with which the N-terminal sequence showed the best homology. Best homology is assigned on the basis of BLAST search results using the entire protein sequence. CoA, coenzyme A.
Mass and pI were calculated from the entire protein sequence.
The unidentified amino acid residue in the N-terminal sequence is indicated by a hyphen.