Table 1.
Homologies of Sequences of AFLP Fragments to Sequences in the Databases
| AFLP Fragment |
GenBank Accession Number |
Length (bp) |
Induced/ Represseda |
Inhibited by DPI? |
Homologyb | BLAST Scorec |
|---|---|---|---|---|---|---|
| 1 | AF211541 | 151 | + | No | EREBP-4 homolog from Arabidopsis (Z97343) | 8e-15 |
| 4 | AF211544 | 141 | + | No | NL27 from potato (AJ009720) | 3e-9 |
| 10 | AF211550 | 144 | + | No | Putative protein predicted from genome sequence of Arabidopsis (AL022140) | 0.007 |
| 11 | AF211551 | 107 | + | No | S domain receptor-like protein kinase from maize (AJ010166) | 0.001 |
| 31 | AF211566 | 154 | + | No | Calcium binding protein CAST from potato (L02830) | 6e-19 |
| 36 | AF211570 | 77 | + | No | Putative chloroplast nucleoid DNA binding protein from Arabidopsis (AC006580) | 2e-4 |
| 41 | AF211574 | 152 | − | No | Nonclathrin coat protein gamma-like protein from Arabidopsis (AL023094) | 2e-19 |
| 44 | AF211577 | 91 | + | No | 13-Lipoxygenase from potato (X96406) | 2e-8 |
| 47 | AF211580 | 121 | + | No | ACC synthase from tobacco (AJ005002) | 9e-12 |
| 52 | AF211584 | 154 | + | No | Anthocyanin-3-glucoside rhamnosyltransferase from Arabidopsis (AC006592) | 6e-7 |
| 57 | AF211589 | 208 | + | No | Calmodulin-like protein from Arabidopsis (AL049862) | 6e-14 |
| 64 | AF211594 | 86 | + | No | Peroxidase 3 from Scutellaria baicalensis (AB024439) | 9e-6 |
| 76 | AF211605 | 133 | + | No | Unknown protein predicted from genome sequence of Arabidopsis (AC005623) | 1e-8 |
| 84 | AF211611 | 154 | + | No | Hypothetical protein predicted from genome sequence of Arabidopsis (AL050352) | 7e-4 |
| 85 | AF211612 | 168 | + | No | Hypothetical protein predicted from genome sequence of Arabidopsis (AC005397) | 3e-4 |
| 97 | AF211622 | 129 | − | Yes | MAP kinase–like protein from Selaginella lepidophylla (U96716) | 2e-6 |
| 101 | AF211626 | 71 | + | No | Similar to synaptobrevin-related protein from Arabidopsis (Z97339) | 8e-4 |
| 102 | AF211627 | 125 | + | No | Putative mitochondrial protein predicted from genome sequence of Arabidopsis (AC006418) | 2e-12 |
| 105 | AF211630 | 68 | − | Yes | Chloroplast genome DNA from tobacco (Z00044) | 2e-19c |
| 110 | AF211634 | 79 | − | Yes | Chloroplast genome DNA from tobacco (Z00044) | 3e-37c |
| 111 | AF211635 | 117 | + | No | DREB1A from Arabidopsis (AB007787) | 1e-14 |
| 126 | AF211645 | 141 | + | No | Protein similar to WRKY transcription factors from Arabidopsis (AC011809) | 3e-12 |
| 139 | AF211656 | 147 | + | No | Hypothetical protein predicted from genome sequence of Arabidopsis (AC005662) | 2e-11 |
| 143 | AF211660 | 144 | + | No | Phosphate-induced phi-1 protein from tobacco (AB018441) | 5e-24 |
| 146 | AF211662 | 108 | + | No | Putative protein predicted from genome sequence of Arabidopsis (AL078470) | 8e-5 |
| 150 | AF211666 | 176 | + | No | Serine/threonine protein kinase isolog from Arabidopsis (U95973) | 6e-10 |
| 157 | AF211672 | 146 | + | No | Similarity to transcription factor TINY from Arabidopsis (AC003979) | 5e-6 |
| 164 | AF211679 | 103 | + | No | Expressed sequence tag from Arabidopsis (AC006577) | 0.002 |
| 175 | AF211690 | 118 | + | No | Hexose transporter protein from tomato (AJ010942) | 5e-7 |
| 215 | AF211724 | 89 | + | No | Flavanol 3-sulfotransferase from Flaveria bidentis (U10275) | 0.002 |
| 216 | AF211725 | 96 | + | No | WPK4 protein kinase, induced by cytokinins, light and sucrose, from wheat (AB011670) | 5e-8 |
| 223 | AF211732 | 105 | + | No | Polygalacturonase 1 β chain from tomato (M98466) | 3e-10 |
| 228 | AF211736 | 174 | + | No | Auxin-induced protein 15A from soybean (S44172) | 1e-13 |
| 231 | AF211738 | 150 | + | No | Hypothetical protein predicted from genome sequence of Arabidopsis (AC002396) | 3e-7 |
| 236 | AF211741 | 104 | + | No | Serine/threonine protein kinase from Arabidopsis (AL022603) | 2e-4 |
| 246 | AF211749 | 118 | + | No | Putative host response protein from Arabidopsis (AL049481) | 5e-6 |
| 256 | AF211758 | 147 | + | No | Receptor-like protein kinase from Arabidopsis (M84658) | 5e-7 |
| 258 | AF211760 | 154 | − | No | Proton-ATPase β subunit from tobacco (X61319) | 3e-22 |
| 264 | AF211766 | 131 | + | No | Putative protein kinase from Arabidopsis (AC005970) | 2e-12 |
| 267 | AF211767 | 106 | + | No | Putative protein predicted from genome sequence of Arabidopsis (AL021749) | 6e-4 |
| 284 | AF211780 | 136 | + | No | Protein phosphatase 2C from alfalfa (Y11607) | 2e-15 |
| 288 | AF211784 | 158 | + | No | Expressed sequence tags similar to glycosyl transferases from Arabidopsis (AC002062) | 2e-14 |
a
Induction (+) or repression (−) by Avr9.
b
GenBank accession numbers of sequences homologous to AFLP fragment are in parentheses.
c
All are BLASTX scores except for 105 and 110, which are BLASTN scores.