Table 1. Primer extension with dNTP substrates.
Template |
Substrate |
Primer extension by dNTP (%) |
||||||||
---|---|---|---|---|---|---|---|---|---|---|
Polymerase | KF– | KF– | KF+ | T4+ | T7– | T7+ | V– | V– | V+ | |
Primer | P1a | SP1a | SP1a | SP1a | P1a | SP1a | P1b | SP1b | SP1b | |
LTA | dATP | 69 | 53 | 17 | 6 | 23 | – | 13 | 12 | – |
dCTP | 38 | 23 | – | – | 7 | – | – | – | – | |
dGTP | – | – | – | – | – | – | – | – | – | |
dTTP | 94 | 88 | 86 | 79 | 81 | 63 | 100 | 91 | 81 | |
LTC | dATP | 52 | 43 | 9 | – | 15 | – | 26 | 12 | – |
dCTP | – | – | – | – | – | – | – | – | – | |
dGTP | 100 | 100 | 100 | 100 | 93 | 81 | 100 | 85 | 81 | |
dTTP | – | – | – | – | – | – | 64 | 32 | 13 | |
LTG | dATP | 19 | 15 | – | – | – | – | – | – | – |
dCTP | 100 | 100 | 100 | 100 | 100 | 88 | 100 | 81 | 75 | |
dGTP | 48 | 35 | 11 | – | 16 | – | 17 | 15 | – | |
dTTP | 24 | 18 | 11 | – | 28 | – | 37 | 16 | – | |
LTT | dATP | 92 | 90 | 86 | 73 | 82 | 67 | 100 | 84 | 76 |
dCTP | 20 | 17 | 6 | – | – | – | 19 | 9 | – | |
dGTP | 74 | 67 | 21 | 8 | 13 | – | 25 | 17 | 7 | |
|
dTTP |
– |
– |
– |
– |
– |
– |
38 |
11 |
– |
Incorrect average | 29 | 23 | 6 | 1 | 9 | 0 | 20 | 10 | 2 | |
Correct average | 97 | 95 | 93 | 88 | 89 | 75 | 100 | 85 | 78 | |
I/Cavg (%) | 30 | 24 | 7 | 1 | 10 | 0 | 20 | 12 | 2 |
Exonuclease-deficient (–) and proofreading (+) variants of Klenow fragment (KF), T4 DNAP (T4), T7 DNAP (T7) and Vent DNAP (V) are indicated. Correct nucleotide incorporation for each template is shown in bold. – entries indicate values below the limit of detection (<5%).
a10 µM primer, 25 µM template, 200 µM substrate, 1 U polymerase, 60 min at 37°C.
b10 µM primer, 4 µM template, 200 µM substrate, 1 U polymerase, 25 cycles of 30 s at 85°C, 1 min at 53°C, 1 min at 63°C.