Table 3. Primer extension with acyNTP substrates.
Template |
Substrate |
Primer extension by acyNTP (%) |
||||||||
---|---|---|---|---|---|---|---|---|---|---|
Polymerase | KF– | KF– | KF+ | T4+ | T7– | T7+ | V– | V– | V+ | |
Primer | P1a | SP1a | SP1a | SP1b | P1b | SP1b | P1c | SP1c | SP1c | |
LTA | acyATP | 10 | 10 | – | – | – | – | – | – | – |
acyCTP | – | – | – | – | – | – | – | – | – | |
acyGTP | – | – | – | – | – | – | 8 | – | – | |
acyTTP | 64 | 56 | 59 | 78 | 81 | 82 | 74 | 64 | 62 | |
LTC | acyATP | – | – | – | – | – | – | 9 | – | – |
acyCTP | 14 | 9 | – | – | – | – | – | – | – | |
acyGTP | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | |
acyTTP | – | – | – | – | – | – | 29 | 20 | – | |
LTG | acyATP | – | – | – | – | – | – | – | – | – |
acyCTP | 100 | 100 | 100 | 100 | 100 | 93 | 100 | 100 | 100 | |
acyGTP | 12 | 11 | – | – | 39 | – | 45 | 28 | – | |
acyTTP | – | – | – | – | – | – | 42 | 26 | – | |
LTT | acyATP | 100 | 100 | 100 | 92 | 93 | 86 | 79 | 68 | 69 |
acyCTP | 10 | – | – | – | – | – | 42 | 34 | – | |
acyGTP | 15 | 12 | – | – | – | – | 23 | 10 | – | |
|
acyTTP |
– |
– |
– |
– |
– |
– |
37 |
34 |
– |
Incorrect average | 5 | 4 | 0 | 0 | 3 | 0 | 20 | 13 | 0 | |
Correct average | 91 | 89 | 90 | 93 | 94 | 90 | 88 | 83 | 83 | |
I/Cavg (%) | 6 | 4 | 0 | 0 | 3 | 0 | 22 | 15 | 0 |
Polymerase identities are the same as those listed for Tables 1 and 2. – entries indicate data below the limit of detection (<5%).
a10 µM primer, 25 µM template, 500 µM substrate, 2 U polymerase, 4 h at 37°C.
b10 µM primer, 25 µM template, 500 µM substrate, 2 U polymerase, 6 h at 37°C.
c10 µM primer, 4 µM template, 200 µM substrate, 2 U polymerase, 35 cycles of 30 s at 85°C, 1 min at 53°C, 1 min at 63°C.