Table 1. Candidate SNPs discovered in directly sequenced brown trout AFLP bands.

	Within individuals as heterozygous state	Between individuals of the same population as homozygous state	Between individuals of different populations as homozygous state
No. of candidate SNPs	19	5	0
No. of AFLP bands concerned	8	3	0
No. of sequences or pairs of sequences analyzed	68	44	20