Table 3.
Kinetic parameters of COPII turnover simulation under control and sterol depleted conditions
Parametera | Control | LDS/HPCD | Ratio [LDS/HPCD:control] |
---|---|---|---|
R | 0.408±0.176 | 0.384±0.144 | 0.941 |
k | 0.162±0.071 | 0.163±0.076 | 1.006 |
Γ | 1.706±1.019 | 1.333±0.608 | 0.781 |
ω | 0.406±0.270 | 0.242±0.099 | 0.596 |
γ | 0.386±0.088 | 0.339±0.081 | 0.878 |
λ | 0.170±0.029 | 0.113±0.018 | 0.665 |
S*/(S*+Cm) | 0.468±0.100 | 0.476±0.084 | 1.017 |
aParameter space that reproduced the experimental data. The range still consistent with these constraints is given by the ‘±’ values. Parameters were defined as: R, ratio of total cellular Sec23/24p to Sar1p; k, Sar1p-GDP binding to ERES; Γ, release of Sar1p-GDP from ERES; ω, GTP-exchange rate; γ, rate of GTP-hydrolysis on Sar1p; λ, release of Sec23/24p from ERES; S*/(S*+Cm), ratio of membrane bound Sar1p-GDP relative to total Sar1p at ERES (for details, see Forster et al, 2006). |