Table 2.
Genetic Representation of the 19k2 Microarray after Updating of Localization Information.
| Number of clones with position known | Number of clones with position unknown | Total microarray clones | Microarray percentage representation | Actual genome percentage representation | |
| Chromosome 1 | 638 | 1018 | 1656 | 8.7% | 7.9% |
| Chromosome 2 | 532 | 593 | 1125 | 5.9% | 7.8% |
| Chromosome 3 | 411 | 558 | 969 | 5.1% | 6.8% |
| Chromosome 4 | 198 | 507 | 705 | 3.7% | 6.3% |
| Chromosome 5 | 380 | 432 | 812 | 4.3% | 6.0% |
| Chromosome 6 | 400 | 487 | 887 | 4.7% | 5.7% |
| Chromosome 7 | 384 | 488 | 872 | 4.6% | 5.2% |
| Chromosome 8 | 291 | 336 | 627 | 3.3% | 4.7% |
| Chromosome 9 | 319 | 402 | 721 | 3.8% | 4.4% |
| Chromosome 10 | 334 | 369 | 703 | 3.7% | 4.4% |
| Chromosome 11 | 434 | 489 | 923 | 4.8% | 4.4% |
| Chromosome 12 | 459 | 457 | 916 | 4.8% | 4.5% |
| Chromosome 13 | 166 | 178 | 344 | 1.8% | 3.6% |
| Chromosome 14 | 284 | 312 | 596 | 3.1% | 3.3% |
| Chromosome 15 | 298 | 309 | 607 | 3.2% | 3.2% |
| Chromosome 16 | 266 | 342 | 608 | 3.2% | 2.8% |
| Chromosome 17 | 405 | 415 | 820 | 4.3% | 2.8% |
| Chromosome 18 | 159 | 151 | 310 | 1.6% | 2.7% |
| Chromosome 19 | 317 | 490 | 807 | 4.3% | 2.2% |
| Chromosome 20 | 232 | 204 | 436 | 2.3% | 2.2% |
| Chromosome 21 | 92 | 114 | 206 | 1.1% | 1.4% |
| Chromosome 22 | 187 | 181 | 368 | 1.9% | 1.5% |
| Chromosome X | 211 | 327 | 538 | 2.8% | 5.1% |
| Chromosome Y | 8 | 4 | 12 | 0.1% | 1.2% |
| Unknown | - | 2412 | 2412 | 12.7% | - |
| Total | 7405 | 11575 | 18980 | 100% | 100% |
For each chromosome, the number of clones with known and unknown positions is listed, as well as its total representation on the microarray. For comparison, the last column identifies the total percentage size of each chromosome within the genome, based on ISCN chromosome size measurements [18]. Discrepancies between the microarray and actual representations are due to genetic redundancy on the microarray, the large number of clones with completely unknown positions, and that the percentage for actual chromosome genomic contribution includes non-coding sequences.