TABLE 2.
Source of HMA results | Reference sequence I
|
Reference sequence II
|
||||||
---|---|---|---|---|---|---|---|---|
No. of:
|
% Repro- ducibility | No. of:
|
% Repro- ducibility | |||||
Samples | Sequences | HMA patterns | Samples | Sequences | HMA patterns | |||
Identical sequences from: | ||||||||
Original PCR ampliconsa from different samples | 12 | 5 | 4 | 100 | 12 | 5 | 5 | 100 |
Cloned materialb from different samples | 12 | 5 | 4 | 100 | 12 | 5 | 5 | 100 |
Original PCR ampliconsa and cloned materialb from the same sample | 42 | 14 | 12 | 100 | 42 | 14 | 12 | 95c |
Multiple tests (five) on the same cloned sample | 23 | 16 | 14 | 100 | 23 | 16 | 14 | 100 |
PCR amplicons obtained by RT-PCR from fecal extracts.
PCR amplicons amplified by PCR from cloned DNA.
For one sample, the initial amplicon gave the pattern of the clone plus an extra band.