Table 2.
Conserved Binding Motifs and Their Percentage of Occurrence for Different Types of Transcription Factors in the Promoter Region of Cold-Inducible, Pathogen-Inducible, and Randomly Selected Gene Clusters
| Type of Transcription Factor |
Name of the cis Element |
Sequence of the cis Element | Percentage of Occurrence in Cold-Inducible Cluster of Interest | Percentage of Occurrence in Pathogen-Inducible Cluster of Interest | Percentage of Occurrence in 8K GeneChip |
Reference |
|---|---|---|---|---|---|---|
| AP2/EREBP | GCC-box | GCCGCC | 5.26 | 4.87 | 7.53 | Shinozaki and Yamaguchi- Shinozaki, 2000 |
| AP2/EREBP | DRE-like | (A/G/T)(A/G) CCGACN(A/T) |
45.60 | 26.83 | 12.76 | Shinozaki and Yamaguchi- Shinozaki, 2000 |
| Myb | AtMyb1 | (A/C)TCC(A/T)ACC | 5.26 | 9.76 | 6.31 | Martin and Paz-Ares, 1997 |
| Myb | AtMyb2 | TAAC(G/C)GTT | 3.51 | 2.44 | 4.87 | Martin and Paz-Ares, 1997 |
| Myb | AtMyb3 | TAACTAAC | 14.04 | 12.20 | 5.28 | Martin and Paz-Ares, 1997 |
| Myb | AtMyb4 | A(A/C)C(A/T)A(A/C)C | 71.93 | 85.36 | 74.78 | Rushton and Somssich, 1998 |
| bZIP, TGA type |
as-1/ocs element-like |
TGACG | 56.14 | 63.41 | 54.50 | Schindler et al., 1992 |
| bZIP, GBF type | G-box | CACGTG | 43.86 | 12.20 | 17.11 | Schindler et al., 1992 |
| bZIP | ABRE-like | (C/G/T)ACGTG(G/T) (A/C) |
68.40 | 17.07 | 23.68 | Shinozaki and Yamaguchi- Shinozaki, 2000 |
| WRKY | W-box | TTGAC(C/T) | 73.68 | 80.49 | 67.24 | Eulgem et al., 2000 |