. 2003 Apr;77(7):4306–4314. doi: 10.1128/JVI.77.7.4306-4314.2003

TABLE 1.

Sequence acquisition numbers for dn/ds ratio analysis

K1-A strain	K1-B strain	K1-C strain	MHC class I-B	KSHV ORF-26	HIV-1 nef	HIV-1 env
AF278829	AF130265	AF178827	HSA238702	AY043000	HI1U03319	M68893	M31451	M21138	AF025758	U12053	AF041126
AF278838	AF130293	AF178831	AF349440	AY042997	HI1U03321	M63929	U22135	AF025750	U90934	U12032	U36875
AF201850	AF130292	AF196317	HSB150	AY042998	HI1U03296	M68894	M38431	AF042101	U90935	A04321	U36876
AF151690	AF130266	AF178832	HSA308547	AY042999	HI1U03351	AF041134	D10112	M38430	AF025749	L42371	AF041131
AF278831	AF178818	AF178826	HSA277845	AY042993	HI1U03345	AJ006287	L14575	AF025754	AF041125	U26942	AF041135
AF151688	AF171056	AF178809	AF288046	AY042994	HI1U03348	U20670	AF041130	U36869	L78831	M33943	M26727
AF278830	AF178802	AF178811	HSA312287	AY042995	HI1U03302	U20673	M65024	AF041132	AF025751	AF049494	U36882
AF278828	AF178804	AF178773	HSA271160	AY042996	HI1U03343	U20677	M60472	M38429	M12507	AF049495	M90025
AF278824	AF178792	AF130302	HSB150B	AY042992	HI1U03311	U20675	AF004394	U45960	AF025763	L22087	M90039
AF278851	AF130301	AF178787	AF335547		HI1U03301	U20676	U39258	U63632	AF025761	U23487	M90028
AF278827	AF178822	AF178795	AF105226		HI1U03347	U20674	U39259	U37270	U15031	U34603	M90042
AF278825	AF133040	AF178806	HSA298262		HI1U03308	U20672	U71182	AF042106	U15032	L08660	M90038
AF201848	AF178801	AF178793	HSA311257		HI1U03299	M17451	AF041129	AF042102	AF035532	L08662	M90044
AF278852	AF178791	AF133042	HSA278766		HI1U03310	U08798	U36870	AF042105	AF035533	U36879	M90037
AF278839	AF178788	AF178815	HSA400823		HI1U03349	L14576	U36874	AF042104	U39362	M38427	M90029
AF171059	AF178824	AF178816	HSA297934		HI1U03320	Y13719	U36873	L02317	U66222	U43141	M90030
AF178779	AF178796	AF178774	HSA409214		HI1U03322	U36859	AF025753	AF025756	U66221	L07422	M90036
AF178790	AF178782	AF178777			HI1U03300	U36860	AF041127	AF025762	K02011	K02007	M90034
AF178778	AF178825	AF178813			HI1U03344	U36862	AF041133	M93259	Z11530	U04908	M90045
AF171057	AF130290	AF178789			HI1U03298		U36863	M21098	M93258	L31963	M90032
AF178784	AF151689	AF178814			HI1U03309		U36884	AF025755	AF003887	M14100	M90033
AF171058		AF178834			HI1U03312		U36861	AF075719	AF025752	D86069
AF178823		AF130298			HI1U03323		AF069139	M17449	AF025759	D86068
AF178798		AF178800			HI1U03305		AF069140	Y13716	L06659	J12030
AF178819		AF178817			HI1U03346		L22088	L08655	L08661	J12031
AF178830		AF130286			HI1U03304		M95292	L08656	U34604	X01762
AF133038		AF201851			HI1U03317		U32396	L08657	L14573	K02083
AF201848		AF178828			HI1U03303		M37574	L08658	U43096	K03455
AF201850		AF130270			HI1U03325		M37575	AF041128	AF042100	U12035
AF133039		AF130300			HI1U03324		M37491	U36880	U36877	U12055
AF130299		AF170531			HI1U03316		M37576	L14574	U36878	U12034
AF130295		AF130274					L07421	M17450	M13137	U12036
AF130296		AF130304						M79344	M90031	M79343
AF178829		AF178803						M90041	M90026	M79354
AF130303		AF178805						M79345	M90046	M79348
AF178775		AF042370						M79347	M90040	M79353
AF178833		AF178776						M79346	M79349	U08799
AF130297		AF178808							M79351	U08800
AF178812		AF196316								D12582
AF178786		AF178781
AF130305		AF178820
AF178807		AF133041
AF130269		AF130267
AF178794		AF130271
AF201853		AF278849
		AF278847
		AF278826
		AF278823
		AF278840
		AF151686
		AF278841
		AF278843