Table 2.
Predicted Retrotransposon Insertion and Divergence Times
| Name | Sites | T | V | K | SE | Mya | SE |
|---|---|---|---|---|---|---|---|
| Zm163K15 | |||||||
| Opie-B | 1229 | 11 | 3 | 0.011 | 0.003 | 0.85 | 0.23 |
| Opie-C | 1258 | 15 | 4 | 0.015 | 0.004 | 1.15 | 0.31 |
| Opie-D | 1225 | 5 | 4 | 0.007 | 0.002 | 0.54 | 0.15 |
| PREM-1 | 3510 | 42 | 17 | 0.017 | 0.002 | 1.31 | 0.15 |
| Zm206C17/Zm238E11 | |||||||
| Grande | 623 | 0 | 0 | 0 | 0 | 0 | 0 |
| Ji | 1235 | 8 | 0 | 0.007 | 0.002 | 0.54 | 0.15 |
| Opie-A | 1254 | 7 | 1 | 0.006 | 0.002 | 0.46 | 0.15 |
| Opie-B | 1229 | 10 | 3 | 0.011 | 0.003 | 0.85 | 0.23 |
| Opie-C | 1239 | 11 | 2 | 0.011 | 0.003 | 0.85 | 0.23 |
| Opie-D | 1226 | 2 | 3 | 0.004 | 0.002 | 0.31 | 0.15 |
| Zm163K15/Zm238E11 | |||||||
| Opie-B | 8946 | 11 | 4 | 0.002 | 0 | 0.15 | 0 |
| Opie-C | 8959 | 9 | 6 | 0.002 | 0 | 0.15 | 0 |
| Opie-D | 5841 | 3 | 1 | 0.001 | 0 | 0.08 | 0 |
T, transition; V, transversion; K, number of substitutions per site calculated according to the Kimura two-parameter method; Mya, estimated insertion or divergence time of the retrotransposon in million years.