Table 5.
Shared Motifs in Other Clusters
| Motif | No. | Similar to |
|---|---|---|
| Cluster 1 | (18) | |
| CTCTCTCT | 13 | |
| GGwATGAC | 6 | AP1 |
| CCAAAAAm | 14 | |
| GTwTGAC | 7 | AP1 |
| TCTTACC | 13 | |
| Cluster 3 | (29) | |
| CGTCACAy | 13 | TCF11 |
| *CyTCwCTC | 20 | |
| *TyCTCTs | 16 | |
| AGCTTTT | 14 | DOF/PBF |
| ACCTTAC | 10 | deltaEF1 |
| Cluster 4 | (40) | |
| CTTTyTCT | 26 | DOF/PBF |
| yTCAGCT | 19 | AP-4 |
| TATCTTC | 21 | NIT2 |
| CTyTCTC | 32 | |
| Cluster 5 | (28) | |
| AAAAAGAT | 15 | DOF/PBF |
| mGCGTGyG | 12 | AhR/Arnt |
| TAACGnnC | 12 | GAMYB |
| CTCTksC | 21 | |
| Cluster 6 | (16) | |
| CTTCTTCC | 6 | |
| yCCTyCnC | 12 | |
| CAATmAAA | 12 | |
| ATmyATA | 14 |
For each gene, 500 bp immediately upstream from the ATG was investigated. The number of genes within each cluster containing a motif is indicated; the total number of genes is shown in parentheses. A selection of motifs from each cluster is shown: motifs present in at least 60% of the genes within a cluster, motifs with a high-probability score, and motifs resembling known transcription factor binding sites (sequences shown in boldface). Some motifs in cluster 3 also are present in cluster 2 (
*)
.