Table 1.

Location of identified repeats in the cotton plastid genome. Table includes repeats at least 30 bp in size, with a sequence identity greater than or equal to 90%. IGS = Intergenic spacer. See Fig. 1 for location of repeats on the gene map.

Repeat Number	Size (bp)	Location
1	30	IGS
2	30	IGS
3	30	rpoC1 intron, rpl16 intron
4	30	ycf2
5	31	IGS
6	32	psbI (5 bp) – IGS, IGS
7	32	IGS
8	32	IGS
9	32	IGS (4 bp) – trnS-GCU, IGS (4 bp) – trnS-UGA
10	32	IGS
11	34	ycf2
12	34	IGS
13	34	rrn23 exon
14	34	ycf2
15	34	ycf2
16	34	ycf2
17	35	ycf3 intron
18	36	ycf3 intron, IGS
19	38	ndhA intron, rps12_3end intron
20	38	ycf2
21	38	ycf2
22	38	ycf2
23	40	IGS
24	43	IGS
25	47	ycf2
26	52	ycf2
27	58	IGS
28	64	ycf2
29	64	ycf2
30	72	psaA exon, psaB exon
31	30	IGS (2 bp) – trnS-GCU, trnS-GGA
32	30	IGS
33	30	IGS
34	31	IGS
35	34	IGS
36	34	ycf2
37	34	ycf2
38	34	IGS
39	34	IGS
40	34	ycf2
41	34	ycf2
42	36	ycf3 intron, IGS
43	38	IGS, ndhA intron
44	38	ycf2
45	38	ycf2
46	41	ycf3 intron, ndhA intron
47	41	IGS
48	43	IGS
49	43	IGS
50	48	IGS
51	52	ycf2
52	52	ycf2
53	64	ycf2
54	64	ycf2