Table 8.

Overview of the combination methods (242 Residues). The residue RMSD values are given for all of the 25 combinations consisting of AMBER (A), PARSE (P), MCCE (M), UHBD (U) and PROPKA (P). Figures marked in bold indicate an improvement while the asterisk indicates the best score.

	A + P	A +M	A + U	A + PR	P + M
ASP	1.556	1.245	1.174	0.837	1.161
GLU	1.301	1.012	0.816	0.676	1.026
HIS	1.331	0.631	0.827	1.000	0.727
LYS	1.281	0.763	0.742	0.646	0.793
TYR	1.899	1.512	1.238	1.028	1.502
	P + U	P + PR	M + U	M + PR	U + PR
ASP	1.074	0.786	0.910	0.818	0.596
GLU	0.834	0.690	0.660	0.766	0.393
HIS	0.812	0.987	0.566	1.289	0.955
LYS	0.742	0.647	0.713	0.755	0.366
TYR	1.212	1.016	0.974	0.956	0.466
	A + P + M	A + P + U	A + P + PR	A + M + U	A + M + PR
ASP	1.262	1.242	1.000	1.038	0.837
GLU	1.064	0.973	0.844	0.761	0.714
HIS	0.792	0.954	0.942	0.520	0.839
LYS	0.868	0.913	0.846	0.615	0.590
TYR	1.607	1.446	1.300	1.195	1.097
	A + U + PR	P + M + U	P + M + PR	M + U + PR	A + P + M + U
ASP	0.773	0.972	0.795	0.681	1.101
GLU	0.539	0.770	0.720	0.529	0.870
HIS	0.771	0.523	0.840	0.897	0.646
LYS	0.518	0.634	0.610	0.597	0.718
TYR	0.869	1.188	1.098	0.782	1.345
	A + P + M + PR	A + P + U + PR	A + M + U + PR	P + M + U + PR	A + P + M + U + PR
ASP	0.929	0.905	0.779	0.738	0.866
GLU	0.798	0.706	0.588	0.592	0.690
HIS	0.754	0.771	0.690	0.668	0.650
LYS	0.683	0.689	0.525	0.540	0.605
TYR	1.256	1.112	0.959	0.959	1.115