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. 2003 Apr;185(7):2178–2186. doi: 10.1128/JB.185.7.2178-2186.2003

TABLE 3.

Complementation of morphology by mosaic and mutant PBPsa

Protein or plasmid Sequences around KTG motif
Complementationb
197-203 204-219 220-228
Proteins
    PBP 5 NRNGLLW DNSLNVDGIKTGHTDK AGYNLVASA
    PBP 6 NRNRLLW SSNLNVDGMKTGTTAG AGYNLVASA
    DacD NRNGLLW DKTMNVDGLKTGHTSG AGFNLIASA
pAG656-11 derivativesc
    pAG656-11 NRNGLLW DNSLNVDGIKTGHTDK AGYNLVASA +
    pAG656-X2A NRNRLLW DNSLNVDGIKTGHTDK +
    pAG656-M1A DSSLNVDGIKTGHTDK +
    pAG656-M2A DNNLNVDGIKTGHTDK +
    pAG656-M3A DNSLNVDGMKTGHTDK +
    pAG656-H DNSLNVDGIKTGTTDK +
    pAG656-M4A DNSLNVDGIKTGHTAK
    pAG656-M11A DNSLNVDGIKTGHTDG
    pAG656-M5A DNSLNVDGIKTGHTAG
pAG565-3 derivativesd
    pAG565-3 NRNRLLW SSNLNVDGMKTGTTAG AGYNLVASA
    pAG565-X1A NRNGLLW SSNLNVDGMKTGTTAG
    pAG565-M6Ae SNNLNEDGMKTGTTAG
    pAG565-M7Ae SSSLNEDGIKTGTTAG
    pAG565-T SSNLNVDGMKTGHTAG
    pAG565-M9A SSNLNVDGMKTGTTDG +
    pAG565-M10A SSNLNVDGMKTGTTAK +
    pAG565-X5B NRNRLLW SSNLNVDGMKTGTTAG
    pAG565-X6A NRNGLLW SSNLNVDGMKTGTTAG
pPJ5 derivativesf (full-length PBP 5 and mutants):
    pPJ5 NRNGLLW DNSLNVDGIKTGHTDK AGYNLVASA +
    pPJ5-DK/AG DNSLNVDGIKTGHTAG +
    pAG5-X3A NRNRLLW DNSLNVDGIKTGHTDK +
    pAG5-X4A NRNRLLW DNSLNVDGIKTGHTAG +
    pPJ5-T217A DNSLNVDGIKTGHADK +
    pPJ5-K213E DNSLNVDGIETGHTDK
    pPJ5-K213R DNSLNVDGIRTGHTDK
a

Residue numbers refer to the mature protein and correspond to the numbering system used in the crystal structure of PBP 5 (9). Amino acids that differ from the sequence of PBP 5 are boldfaced and double underlined. The KTG active site motif is underlined once in the first sequence. Residues that are boldfaced and double underlined indicate differences from the first sequence shown in each section. For clarity, the sequence of residues 197 to 203 and 220 to 228 were omitted from the table when these were identical to the first sequence in each section. The inserted genes in each plasmid were sequenced to confirm that no other alterations were present. The sequences of the primer pairs used to create each mutant can be inferred from the amino acid alterations, but these are also available on request.

b

Effect of plasmid-encoded proteins on the cellular morphology of E. coli CS701-1 or CS703-1: +, complete or virtually complete restoration of uniform wild-type rod-shaped morphology; −, little or no restoration of uniform wild-type rod-shaped morphology.

c

These derivatives had PBP 5 residues 200 to 219 inserted into PBP 6, and thus the residues listed in the 204-219 column are from PBP 5.

d

These derivatives had PBP 6 residues 200 to 219 inserted into PBP 5, and thus the residues listed in the 204-219 column are from PBP 6. The residue at position 141 was D in all these derivatives except the last two, in which it was G. The G141D mutation was present in plasmid pAG565-3 and several of its derivatives. However, this mutation did not affect the complementation properties of the PBP mosaic proteins (compare the results for pAG565-3 with those for pAG565-X5B and pAG565-X6A).

e

The glutamic acid residue (E) at position 209 in pAG565-M6A and pAG565-M7A is present in the E. coli K-12 genomic sequence (6), but a valine residue (V) is present in E. coli O157:H7 (15) and in the parental E. coli strain CS109 used in this work. Thus, PBP 5 with either glutamic acid or valine in this position has wild-type properties.

f

These derivatives had full-length PBP 5 with various mutations.