TABLE 2.
Amino acid | Codon | Codon usagea for:
|
||||
---|---|---|---|---|---|---|
MM1 | Spn | orf13 | orf14 | mml | ||
Arg | AGG | 0.12 | 0.06 | 0.22 (5) | 0.57 (4) | 0.00 (0) |
AGA | 0.33 | 0.19 | 0.48 (11) | 0.00 (0) | 0.18 (2) | |
CGG | 0.04 | 0.05 | 0.04 (1) | 0.00 (0) | 0.09 (1) | |
CGA | 0.14 | 0.12 | 0.17 (4) | 0.14 (1) | 0.09 (1) | |
CGU | 0.26 | 0.43 | 0.04 (1) | 0.29 (2) | 0.18 (2) | |
CGC | 0.11 | 0.16 | 0.04 (1) | 0.00 (0) | 0.45 (5) | |
Asn | AAU | 0.62 | 0.67 | 0.48 (10) | 0.17 (1) | 0.37 (7) |
AAC | 0.38 | 0.33 | 0.52 (11) | 0.83 (5) | 0.63 (12) | |
Asp | GAU | 0.72 | 0.67 | 0.70 (14) | 0.38 (3) | 0.37 (10) |
GAC | 0.28 | 0.33 | 0.30 (6) | 0.62 (5) | 0.63 (17) | |
Gln | CAG | 0.29 | 0.34 | 0.26 (5) | 0.56 (5) | 0.50 (5) |
CAA | 0.71 | 0.66 | 0.74 (14) | 0.44 (4) | 0.50 (5) | |
Ile | AUA | 0.19 | 0.10 | 0.23 (7) | 0.33 (2) | 0.00 (0) |
AUU | 0.51 | 0.55 | 0.47 (14) | 0.17 (1) | 0.27 (3) | |
AUC | 0.31 | 0.35 | 0.30 (9) | 0.50 (3) | 0.73 (8) | |
Lys | AAG | 0.29 | 0.36 | 0.38 (9) | 0.29 (2) | 0.62 (13) |
AAA | 0.71 | 0.64 | 0.62 (15) | 0.71 (5) | 0.38 (8) |
Data for Spn were compiled from reference 35 (http://www.tigr.org/tigr-scripts/CMR2/codon_tables.spl). Numbers in parentheses are the numbers of amino acid residues present in the corresponding protein.