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. 2006 May 26;91(4):1460–1470. doi: 10.1529/biophysj.105.074617

FIGURE 5.

FIGURE 5

Relative motion of distamycin inside the DNA minor groove. Three representative snapshots of distamycin from the 10-ns simulation of the distamycin-DNA complex are shown superimposed after least-square fitting: initial conformation (black), and conformations corresponding to the first (blue) and second (red) rapid increase in configurational entropy (see arrows in Figs. 3 and 6).